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Report for CCDS39102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39102.1 Public Mus musculus 5 Limch1 23 108 98 CCDS HistoryNCBI Gene:77569Re-query CCDS DB by CCDS ID:39102.1Re-query CCDS DB by GeneID:77569See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101164.10 ENSMUSP00000098723.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101164.10Link to Ensembl Protein Viewer:ENSMUSP00000098723.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000101164Re-query CCDS DB by Protein ID:ENSMUSP00000098723
Original member Current member NCBI NM_001001980.3 NP_001001980.2 Accepted alive Link to Nucleotide Sequence:NM_001001980.3Link to Protein Sequence:NP_001001980.2Re-query CCDS DB by Nucleotide ID:NM_001001980Re-query CCDS DB by Protein ID:NP_001001980Link to BLAST:NP_001001980.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001980.2 1057 Q3UH68-1 1057 100% 0 0

Chromosomal Locations for CCDS 39102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 66745910 66746005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66857883 66857953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66881899 66881968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66953669 66953775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66959588 66959618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66961157 66961267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66969076 66969271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66974410 66974662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66993143 66993178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66997120 66997246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66998647 66998804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66998980 66999388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67002428 67002649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67016465 67016555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67017617 67017777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67021892 67021997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67026072 67026112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67027488 67027568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67028758 67028850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67029702 67029806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67030826 67030950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67033078 67033199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67034166 67034289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67044346 67044454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67046699 67046801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 67054236 67054261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3174 nt):
ATGGCTTGCCCCGCTCTCGGTCTGGAAGTCCTTCAACCCCTGCAGCCCGAACCACCTCCGGAGCCTGCCT
TCGCCGAGGCACAGAAGTGGATCGAGCAAGTCACTGGTCGAAGTTTTGGTGACAAAGACTTCCGGACAGG
ACTAGAAAATGGGATCCTCCTTTGCGAGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAAT
AGATTGCCTACCCCCATTGCAGGATTGGACAATACCATCTTATTCTTGAGAGGCTGTAAGGAGCTTGGCC
TTAAAGAATCTCAACTCTTTGACCCGAGTGACCTCCAGGATACCTCCAACAGGGTCACTGTCAAGAACCT
CGATTATAGCAGGAAGCTGAAAAACGTGCTAGTGACCATTTACTGGCTGGGGAAAGCTGCAAACAGCTGT
GCATCCTACGGTGGAACCACACTGAACCTGAAGGAGTTTGAAGGGCTGTTGGCTCAGATGCGAAAGGAGA
CTGACGACATTGATAGCCCGAAGCGCAGCATCCGAGACAGTGGCTACATCGACTGCTGGGACTCTGAACG
CAGCGACTCCCTCTCTCCTCCTCGCCACGGACGGGATGACTCCTTTGACAGCCTGGATTCTTTTGGCTCC
CGCTCCAGGCAGACACCTTCGCCAGATGTAGTTCTCAGGGGAAGCAGTGATGGAAGAGGAAGCGATTCTG
AATCAGACTTGCCGCACCGGAAGTTGCCAGATGTGAAGAAAGATGATATGTCCGCACGAAGGACTTCTCA
TGGTGAGCCGAAATCAGCAGTGCCTTTTAACCAGTACCTCCCGAACAAAAGCAACCAGACGGCCTACGTC
CCGGCGCCTCTGAGAAAGAAGAAGGCGGAGCGGGAGGAATTCAGGAAGAGTTGGAGCACCGCCACCTCCC
CCCTGGGTGGGGAAAGGCCCTTCAGATACGGTCCCAGAACTCCTGTGTCAGATGACGCAGAGAGCACGAG
TATGTTTGACATGCGGTGTGAGGAGGAGGCAGCGGTGCTGCCGCACAGCAGGGCCCGCCAGGAGCAGCTG
CAGCTGATAAATAACCAGCTGAGGGAAGAGGACGACAAATGGCAAGATGACCTGGCTCGCTGGAAGAGCC
GGAGAAGAAGCGCTTCTCAGGACTTGATCAAGAAAGAGGAAGAAAGGAAAAAAATGGAGAAGCTGATGTC
TGGGGAAGATGGGACAAGTGAGCGGAGGAAAAGCATCAAAACTTACAGAGAAATCGTCCAAGAAAAAGAG
CGGAGAGAGAGGGAACTTCATGAGGCGTACAAGAACGCAAGGTCGCAGGAGGAGGCCGAGGGGATCCTCC
AGCAGTACATCGAGAGGTTCACCATCAGTGAGGCTGTCCTCGAACGCTTGGAGATGCCAAAAATCCTGGA
AAGAAGCCATTCAACAGAGCCAAACGTGTCCTCCTTCCCAAACGACCCCAGCCCCATGAAGTACCTGCGG
CAGCAGTCACTGCCCCCACCCAAGTTCACTGCCACGGTTGAGACCACCATAGCTCGCACCAGTGTCCCAG
AGAGCATTGCGTCAGCAGGCACTGGGTCTCCAAGCAAAATCATCACTCCAAACACAGTGCCTATGCTGAC
ACCCAGGCCTTACTCCCAGCCCAAAAACTCTCAAGAGGTTCTGAAGACTTTTAAGGTAGATGGGAAGGTC
AGCATGAATGGGGAAATGGCCCCTGGAGATGAGGAAGGAAAGGAAAAAGAAGGCCCTGCAGCTGCAGCCC
CTGGCCCTTCCTTAACCAAGTCCCAGATGTTTGAAGGTGTGGCCACGGTGCACGACTCTCCTGTGCAGGT
GAAACAAGGCAGCAACAGCATCGAGATCAACATCAAGAAGCCAAATTCTGCTCCCCAGGAACTGACAGCA
GCCTCTGAGGAAACTGAATCGAACGGCCAAGAGGATGAAGACGGTGAAGAAAGGCCAGGGACAGGGGATT
TGGAGCCTGACTCGGCAGAACCCCAGCACTTTACGACAACTGTGACTCGGTGCAGCCCAACAGTGGCCTT
GGTGGAGTTTTCATCCAACCCGCAGCTGAAGAATGAGGTGCCAGAACAAGGCCAGAAGAAGCCAGAAGAT
GAGATGAGTGGGAAGGTGGAGTTAGTGTTGTCACAGAAGGTGGCAAAGCCAAAATCCCCAGAGCCTGAAG
CAACCCTGACGTTTCCATTTCTCGACAAAATGCCTGAAACCAACCAACTACATTTGCCAAATCCCAGTTC
TCAAGCGGATTCTCCAAGCAGTGAAAAGTCCCCTGGGAGCACACCCTTTAAGTTCTGGGCATGGGACCCA
GAAGAGGAGCGCCGGCGACAGGAGAAATGGCAGCAGGAGCAGGAACGTCTGCTGCAGGAGAGGTATCAGA
AGGAGCAAGACAAGCTGAAGGAGGAGTGGGAAAAGGCCCAGAAGGAGGTCGAAGAAGAAGAACGCAGATA
CTACGAGGAGGAGCGTAAGATAATTGAAGACACGGTGGTTCCATTCACTATTTCCTCAAGCTCTGCAGAC
CAACTGTCTACGTCCTTGTCTGTAACTGAAGGCAGCGGGACAAGGAATAAGATGGACTTGGAAAACTGCC
CAGACAAAGAAAACGAGAGAAGACAGAAGACGCCTTTCCAGGAGAATGACGGTGATTCATTGCTCAAAAC
TAGAGAAGGTGGTCTGCCAGAGGAGCAGAGCCTAACTCCAAGTCCCTCGGCTAACCCTGAAATCTCCGTG
TCAAAAGGAATCCATCAGGACCCGCAGCTGGAGGCAGAGGCTGGGGCCCCACACTGTGGTACAAACCCAC
AGCCAGCTCAGGATCCACCTCGGAATCAACAGATACCAAACCCACCAACATCCACGTCGGAAGATGTGAA
GCCCAAAACCTTGGCCCTGGAGAAAACCATCAATCATCAGATGGAGTCTCCGGGGGAAAGGCGGAAGTCT
ATAAGCGGGAAGAAACTGTGCTCCTCCTGCGGGCTCACTTTGGGTAAAGGTGCTGCGATGATCATCGAGA
CCCTGAATCTCTACTTTCACATTCAGTGTTTCAGGTGCGGCATCTGTAAAGGACAGCTCGGAGATGCAGT
AAGCGGGACAGACGTCAGGATTCGCAATGGTCTCCTAAACTGTACCGACTGCTACATGCGATCCAGAAGT
GCCGGCCAGCCTACAACACTGTGA

Translation (1057 aa):
MACPALGLEVLQPLQPEPPPEPAFAEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNAIKPGLVKKIN
RLPTPIAGLDNTILFLRGCKELGLKESQLFDPSDLQDTSNRVTVKNLDYSRKLKNVLVTIYWLGKAANSC
ASYGGTTLNLKEFEGLLAQMRKETDDIDSPKRSIRDSGYIDCWDSERSDSLSPPRHGRDDSFDSLDSFGS
RSRQTPSPDVVLRGSSDGRGSDSESDLPHRKLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYV
PAPLRKKKAEREEFRKSWSTATSPLGGERPFRYGPRTPVSDDAESTSMFDMRCEEEAAVLPHSRARQEQL
QLINNQLREEDDKWQDDLARWKSRRRSASQDLIKKEEERKKMEKLMSGEDGTSERRKSIKTYREIVQEKE
RRERELHEAYKNARSQEEAEGILQQYIERFTISEAVLERLEMPKILERSHSTEPNVSSFPNDPSPMKYLR
QQSLPPPKFTATVETTIARTSVPESIASAGTGSPSKIITPNTVPMLTPRPYSQPKNSQEVLKTFKVDGKV
SMNGEMAPGDEEGKEKEGPAAAAPGPSLTKSQMFEGVATVHDSPVQVKQGSNSIEINIKKPNSAPQELTA
ASEETESNGQEDEDGEERPGTGDLEPDSAEPQHFTTTVTRCSPTVALVEFSSNPQLKNEVPEQGQKKPED
EMSGKVELVLSQKVAKPKSPEPEATLTFPFLDKMPETNQLHLPNPSSQADSPSSEKSPGSTPFKFWAWDP
EEERRRQEKWQQEQERLLQERYQKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTISSSSAD
QLSTSLSVTEGSGTRNKMDLENCPDKENERRQKTPFQENDGDSLLKTREGGLPEEQSLTPSPSANPEISV
SKGIHQDPQLEAEAGAPHCGTNPQPAQDPPRNQQIPNPPTSTSEDVKPKTLALEKTINHQMESPGERRKS
ISGKKLCSSCGLTLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCTDCYMRSRS
AGQPTTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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