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Report for CCDS39127.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39127.1 Public Mus musculus 5 Ythdc1 23 108 98 CCDS HistoryNCBI Gene:231386Re-query CCDS DB by CCDS ID:39127.1Re-query CCDS DB by GeneID:231386See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39127.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038384.7 ENSMUSP00000039133.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038384.7Link to Ensembl Protein Viewer:ENSMUSP00000039133.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038384Re-query CCDS DB by Protein ID:ENSMUSP00000039133
Original member Current member NCBI NM_177680.4 NP_808348.2 Accepted alive Link to Nucleotide Sequence:NM_177680.4Link to Protein Sequence:NP_808348.2Re-query CCDS DB by Nucleotide ID:NM_177680Re-query CCDS DB by Protein ID:NP_808348Link to BLAST:NP_808348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808348.2 736 E9Q5K9-1 736 100% 0 0

Chromosomal Locations for CCDS 39127.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 86804564 86804591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86815629 86815730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86816464 86816792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86816907 86817333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86820086 86820175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86820633 86820686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86821252 86821346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86822596 86822704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86822791 86822908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86826727 86826811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86827955 86828121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86830554 86830636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86831664 86831700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86831773 86831836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86831948 86832010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86833508 86833642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 86835684 86835908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGGCGGCCGACAGCCGGGAGGAGAAAGATGGGGAACTTAATGTTTTGGATGATATTTTGACTGAAGTAC
CAGAACAGGATGATGAATTGTATAATCCAGAGAGTGAACAAGATAAAAATGAGAAAAAAGGATCAAAAAG
AAAAAGTGAGAGAATGGAGTCTACTGACACCAAGCGACAAAAACCTTCCATCCATTCAAGACAATTGATT
TCTAAGCCACTAAGCTCATCTGTAAGCAATAATAAAAGAATAGTTAGTACAAAAGGAAAGTCGGTTACAG
AATATAAAAATGAGGAATATCAAAGATCTGAAAGGAACAAGCGTCTAGATGCTGATCGAAAAATTCGTCT
GTCAAGCAGTTCCTCTAGAGAACCTTACAAGAGTCAACCAGAAAAAACTTGTCTACGGAAAAGGGATTCT
GAAAGAAGGGCCAAGTCTCCTACACCAGATGGTTCTGAGAGAATTGGGCTTGAAGTTGATAGACGTGCAA
GCAGATCCAGCCAGTCTTCAAAGGAAGAGGTGAACTCTGAAGACTATGGCTCTGACCACGAGACAGGAAG
CAGTGGTTCTTCTGAACAGGGCAACAACACTGAGAATGAGGAGGAAGGAGGGGAGGAAGATGTAGAGGAA
GATGAAGAGGTAGATGAAGATGCAGAAGATGATGAGGAAGTGGATGAAGATGCAGAGGAGGAGGAGGAAG
AGGATGAAGAGGAAGAAGAGGATGAGGACGAGGATGAAGAGGAAGAAGAATATGAACAGGATGAGAGAGA
TCAGAAGGAAGAAGGGAATGATTATGACACCCGAAGTGAGGCCAGTGATTCTGGTTCCGAGTCTGTTTCC
TTCACAGATGGATCTGTCAGATCTGGGTCAGGAACAGATGGATCAGATGAGAAAAAGAAGGAAAGGAAGA
GAGCTCGAGGCATATCACCCATTGTCTTTGATAGAAGTGGCAGTTCTGCATCAGAGTCATATGCAGGTTC
AGAAAAGAAGCATGAGAAATTATCATCTTCCGTTCGTGCTGTCCGAAAAGATCAAACCAGTAAACTCAAA
TATGTCCTTCAGGATGCAAGATTTTTCCTCATAAAGAGTAATAACCATGAGAATGTGTCTCTTGCCAAAG
CAAAGGGTGTATGGTCCACATTGCCTGTAAATGAGAAGAAATTAAATCTTGCATTTAGATCTGCAAGGAG
TGTTATATTAATATTTTCTGTCAGAGAAAGTGGAAAATTTCAAGGTTTTGCCAGATTGTCTTCAGAATCA
CACCATGGCGGATCTCCTATACACTGGGTGCTTCCAGCAGGAATGAGTGCTAAAATGCTTGGAGGTGTTT
TTAAAATAGACTGGATTTGCAGGCGTGAATTACCCTTTACTAAATCAGCTCATCTCACCAATCCCTGGAA
TGAACATAAGCCAGTAAAGATTGGACGTGATGGACAGGAAATTGAACTTGAATGTGGAACTCAGCTTTGT
CTTCTGTTTCCCCCTGATGAAAGTATTGACTTGTATCAGCTCATTCATAAAATGCGTCACAAGAGAAGAA
TGCATTCTCAGCCTCGATCAAGAGGACGTCCATCCCGTCGAGAACCAGTCCGGGATGTGGGAAGGCGTCG
ACCAGAAGATTATGATATTCATAACAGCAGAAAGAAACCAAGGATTGACTATCCCCCTGAGTTTCACCAG
AGACCAGGGTATGTAAAGGATCCCCGATACCAGGAAGTGGACAGTTTTACAAATCTTATTCCCAACAGAC
GATTTTCAGGAGTTCGCCGAGATGTGTTTTTAAATGGGTCCTACAATGATTATGTGAGGGAATTTCATAA
CATGGGACCACCGCCTCCTTGGCAAGGAATGCCTCCTTACCCGGGAATAGAACAACCTCCACACCATCCT
TACTACCAGCACCATGCCCCACCTCCTCAAGCCCACCCCCCTTACTCAGGACACCATCCGGTACCACATG
AAGCAAGATACAGAGATAAACGAGTACATGACTATGATATGAGGGTCGATGATTTCCTTCGCCGCACGCA
AGCTGTGGTCAGTGGTCGGAGAAGTAGACCTCGAGAAAGAGATCGGGAGCGAGAGCGAGACCGCCCCAGA
GATAACAGAAGAGATAGAGAGCGAGACAGAGGTCGTGATCGAGAAAGAGAGAGAGAAAGAATATGTGATC
GGGACAGAGACCGAGGGGAGAGAGGTCGTTATCGAAGATAA

Translation (736 aa):
MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSERMESTDTKRQKPSIHSRQLI
SKPLSSSVSNNKRIVSTKGKSVTEYKNEEYQRSERNKRLDADRKIRLSSSSSREPYKSQPEKTCLRKRDS
ERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEDYGSDHETGSSGSSEQGNNTENEEEGGEEDVEE
DEEVDEDAEDDEEVDEDAEEEEEEDEEEEEDEDEDEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVS
FTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLK
YVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSES
HHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLC
LLFPPDESIDLYQLIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDYDIHNSRKKPRIDYPPEFHQ
RPGYVKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDYVREFHNMGPPPPWQGMPPYPGIEQPPHHP
YYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPR
DNRRDRERDRGRDRERERERICDRDRDRGERGRYRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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