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Report for CCDS39140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39140.1 Public Mus musculus 5 Adamts3 23 108 98 CCDS HistoryNCBI Gene:330119Re-query CCDS DB by CCDS ID:39140.1Re-query CCDS DB by GeneID:330119See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39140.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061427.9 ENSMUSP00000058552.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061427.9Link to Ensembl Protein Viewer:ENSMUSP00000058552.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061427Re-query CCDS DB by Protein ID:ENSMUSP00000058552
Original member Current member NCBI NM_001081401.2 NP_001074870.1 Accepted alive Link to Nucleotide Sequence:NM_001081401.2Link to Protein Sequence:NP_001074870.1Re-query CCDS DB by Nucleotide ID:NM_001081401Re-query CCDS DB by Protein ID:NP_001074870Link to BLAST:NP_001074870.1

Chromosomal Locations for CCDS 39140.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 89677364 89677926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89683142 89683259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89684312 89684519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89686776 89686908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89691300 89691465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89693039 89693202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89694750 89694830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89698204 89698327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89700407 89700540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89701639 89701814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89702934 89703079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89705191 89705304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89706650 89706782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89707305 89707448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89707802 89707907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89708611 89708767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89710657 89710740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89721654 89721853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89775285 89775441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89861299 89861705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89881535 89881562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89882822 89882890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3612 nt):
ATGGTGTTCCTGTCACTTTGGTTGATAGCAGCCTCTCTGGTAGAGGTTAGGACATCAGCTGATGGACAAG
CTGGTACTGACGAAATGGTGCAAATAGATTTACCAACAAAGAGATACAGAGAGTATGAGCTGGTGACACC
AGTTAGCACGAATCTAAAAGGACATTATCTTTCCCATATTCTTTCTGCAAATCACAAAAAGAGGTCACCC
AGGGACGTGTCATCTAACTCAGAGCATTTGTTCTTCAACGTCACGGCATTTGGAAGAGATTTTCATCTTC
GACTGAAGCCAAACACTCACTTCATAGCTCCTGGGGCTGTGGTGGAATGGCATGAGACAGCTCCAAGGCC
TGGGAATACCACTGACCCCAGAAACAGCCATCTACACGGAAGTGCTTCAGAAGGAAGCTGGAGATCAGAG
CCTTTGCAGACCAGCTGTGCCTATGTTGGTGACATCATGGACATTCCAGGAACCTCTGTTGCCATTAGCA
ACTGTGATGGTCTGGCTGGGATGATAAAGAGCGATGATGAAGAGTATTTCATTGAACCCTTGGAGAGAGG
GAAGCAGATGGATGAAGAAAATGGAAGGATTCACGTTGTCTACAAGAGATCAGCAGTGGAGCAGCCTCCC
AGAGATGTATCTGAAGACGTCTACCACAGGGAGTCGGACCTGGAAGGCCTTGACGATCTAGGTACAGTTT
ACAGCAACATTGGCCAGCAGCTGAACAAGACAATGCGGCGCCGCAGACACACGGGAGAGAACGATTACAA
CATCGAGGTGCTTCTGGGAGTGGATGACTCTGTGGTCCGTTTCCATGGCAAAGAGCATGTCCAAAATTAC
CTCCTCACCCTGATGAACATTGTAAATGAAATCTACCACGATGAGTCCCTCGGAGTGCATATAAATGTGG
TCCTGGTACGAATGATTATGCTTGGTTATGCAAAGTCCATCAGTCTCATCGAAAGGGGAAACCCGTCCAG
GAGCCTGGAGAACGTGTGCCGATGGGCTTGCCAGCAACAGAAAACTGATCCCAACCACGCCGAACACCAT
GATCACGCAATTTTCTTAACCAGGCAAGACTTTGGGCCTGCTGGAATGCAAGGATATGCTCCTGTCACTG
GCATGTGTCACCCAGTGAGAAGTTGCACCCTGAATCATGAAGATGGTTTTTCATCTGCTTTTGTAGTAGC
CCATGAAACTGGCCATGTGTTGGGCATGGAGCATGACGGGCAAGGCAATCGGTGTGGCGATGAGACTGCC
ATGGGCAGTGTCATGGCGCCACTAGTGCAAGCTGCCTTCCATCGTTATCACTGGTCCAGATGCAGCGGTC
AGGAACTGAAACGATACATCCATTCCTATGACTGCCTCCTTGATGACCCCTTTGAACACGACTGGCCCAA
ACTCCCAGAACTTCCCGGAATTAATTACTCCATGGATGAGCAATGCCGTTTTGACTTTGGCGTTGGCTAC
AAGATGTGTACTGCGTTCCGAACCTTTGACCCATGTAAACAGCTATGGTGCAGCCACCCTGATAACCCAT
ACTTCTGTAAGACCAAGAAGGGGCCCCCACTCGACGGGACTGAGTGTGCTGCTGGCAAGTGGTGCTATAA
AGGACACTGCATGTGGAAGAATGCTAACCAGCAAAAGCAAGATGGCAACTGGGGGTCGTGGACCAAATTT
GGCTCCTGTTCTAGGACATGTGGAACCGGTGTTCGTTTTAGAACACGCCAATGCAATAATCCCACGCCCA
TCAATGGTGGGCAGGACTGCCCTGGTGTTAATTTTGAGTACCAGCTTTGTAATACAGAAGAATGCCAAAA
GCACTTTGAGGACTTCAGGGCCCAGCAGTGCCAACAGCGTAACTCACACTTTGACTACCAGAATACCAAA
CACCACTGGCTGCCGCATGAACATCCCGACTCCAAGAAAAGATGCCATCTTTACTGTCAGTCCAAAGAGA
CTGGGGATGTTGCTTACATGAAACAACTGGTGCACGACGGAACGCGATGCTCTTACAAAGATCCATACAG
CATATGTGTGCGAGGAGAATGTGTGAAAGTGGGCTGTGATAGAGAAATCGGCTCCAACAAGGTTGAGGAT
AAGTGTGGGGTCTGTGGAGGGGACAATTCCCACTGTCGAACTGTGAAAGGGACATTTACCAGGACACCCA
GGAAACTTGGGTACCTTAAGATGTTTGATATACCCCCTGGGGCTAGACATGTGTTAATCCAAGAAGACGA
GGCTTCTCCTCATGTTCTTGCCATTAAGAATCAAGCCACAGGTCACTACATTTTAAATGGCAAAGGGGAG
GAAGCCAAGTCACGGACCTTCATAGATCTTGGTGTGGAGTGGGATTACAACATTGAAGATGACATTGAAA
CCCTCCACACAGATGGCCCGCTACATGACCCCGTTATTGTTCTGATCATACCTCAGGAGAACGACACGCG
CTCCAGCCTGACGTATAAGTACATCATCCACGAAGACTCGGTGCCAACGATCAACAGCAACAACGTCATC
CAGGAGGAGCTGGATACCTTCGAGTGGGCGCTGAAGAGCTGGTCTCAGTGCTCCGAGCCCTGTGGCGGAG
GATTCCAGTATACGAAATATGGATGCCGAAGGAAAAGCGACAGTAAAATGGTTCACCGCAGTTTCTGCGA
GGTCAATAAAAAGCCAAAACCCATCAGACGCATGTGCAACATTCAGGAGTGCACACACCCGGTCTGGGCA
GCGGATGAATGGGAGCACTGTAGCAGAAGCTGTGGCAGCTCCGGGAACCAGCTGCGCACCGTGCGCTGCC
TCCAGCCACTGCAGGATGGCACCAACCGCTCGGTGCACAGCAAGTACTGCCTGGGAGACCGTCCTGAGAG
CCGCCGGCCCTGTAACAGAGTGCCCTGTCCAGCTCAGTGGAAAACAGGATCCTGGAATGAGTGTTCAGTG
ACCTGCGGTGAGGGAACAGAGGTGAGACAGGTTCTGTGCAGGACTGGAGACCACTGTGATGGAGAAAAGC
CCGAGTCTGTCAGACCCTGCCAGCTGCCTCCCTGTAATGATGAGCCATGTTTGGGTGACAAGTCCATATT
CTGTCAAATGGAGGTGCTAGCAAGATACTGCTCCATACCAGGGTATAACAAGTTATGCTGCGAATCATGT
AGCAAGCGCAGTGGTACCCTGCCTCCGCCATACCTTCAAGAAGCTGCTGAAATCCACAGTGATGCTATCT
TTGGCCCTAGTGACCTCCCTAGGTCCCTAGTCATGCCTACACCCTTCCTCCCTTCCTCCTCAGGGACCCG
TGCTGAGAAGAAATCCTTGAGTAGCTTCTCTTCCATGGCAAACCCCAATGCGGATGCTGCCTTCAGAGCC
AGCAGCAGAGCTAGTGCTGACTTCCCCCGGAAGAGAGCACATCAGGCTGGAAGAAAGACTCTGGAGTCAG
TGCCATCCTCCTCATCCATAAAGACTGATCACCTTCGTCCCGCCTCCCCTGTGGCTGCTGCCCCCTCCCC
TGCTATCAGCGATTCAATAGGTGCTTCTCCCCAGACAAGAACCCCAAAGAAAGATGATGCAAAGAGTGTT
AGCAGGAGACATCCGACCAGGTCAACAGCCTCAGAGAGATGA

Translation (1203 aa):
MVFLSLWLIAASLVEVRTSADGQAGTDEMVQIDLPTKRYREYELVTPVSTNLKGHYLSHILSANHKKRSP
RDVSSNSEHLFFNVTAFGRDFHLRLKPNTHFIAPGAVVEWHETAPRPGNTTDPRNSHLHGSASEGSWRSE
PLQTSCAYVGDIMDIPGTSVAISNCDGLAGMIKSDDEEYFIEPLERGKQMDEENGRIHVVYKRSAVEQPP
RDVSEDVYHRESDLEGLDDLGTVYSNIGQQLNKTMRRRRHTGENDYNIEVLLGVDDSVVRFHGKEHVQNY
LLTLMNIVNEIYHDESLGVHINVVLVRMIMLGYAKSISLIERGNPSRSLENVCRWACQQQKTDPNHAEHH
DHAIFLTRQDFGPAGMQGYAPVTGMCHPVRSCTLNHEDGFSSAFVVAHETGHVLGMEHDGQGNRCGDETA
MGSVMAPLVQAAFHRYHWSRCSGQELKRYIHSYDCLLDDPFEHDWPKLPELPGINYSMDEQCRFDFGVGY
KMCTAFRTFDPCKQLWCSHPDNPYFCKTKKGPPLDGTECAAGKWCYKGHCMWKNANQQKQDGNWGSWTKF
GSCSRTCGTGVRFRTRQCNNPTPINGGQDCPGVNFEYQLCNTEECQKHFEDFRAQQCQQRNSHFDYQNTK
HHWLPHEHPDSKKRCHLYCQSKETGDVAYMKQLVHDGTRCSYKDPYSICVRGECVKVGCDREIGSNKVED
KCGVCGGDNSHCRTVKGTFTRTPRKLGYLKMFDIPPGARHVLIQEDEASPHVLAIKNQATGHYILNGKGE
EAKSRTFIDLGVEWDYNIEDDIETLHTDGPLHDPVIVLIIPQENDTRSSLTYKYIIHEDSVPTINSNNVI
QEELDTFEWALKSWSQCSEPCGGGFQYTKYGCRRKSDSKMVHRSFCEVNKKPKPIRRMCNIQECTHPVWA
ADEWEHCSRSCGSSGNQLRTVRCLQPLQDGTNRSVHSKYCLGDRPESRRPCNRVPCPAQWKTGSWNECSV
TCGEGTEVRQVLCRTGDHCDGEKPESVRPCQLPPCNDEPCLGDKSIFCQMEVLARYCSIPGYNKLCCESC
SKRSGTLPPPYLQEAAEIHSDAIFGPSDLPRSLVMPTPFLPSSSGTRAEKKSLSSFSSMANPNADAAFRA
SSRASADFPRKRAHQAGRKTLESVPSSSSIKTDHLRPASPVAAAPSPAISDSIGASPQTRTPKKDDAKSV
SRRHPTRSTASER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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