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Report for CCDS39229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39229.1 Public Mus musculus 5 Pxn 23 108 98 CCDS HistoryNCBI Gene:19303Re-query CCDS DB by CCDS ID:39229.1Re-query CCDS DB by GeneID:19303See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086523.6 ENSMUSP00000083709.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086523.6Link to Ensembl Protein Viewer:ENSMUSP00000083709.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000086523Re-query CCDS DB by Protein ID:ENSMUSP00000083709
Original member NCBI NM_133915.3 NP_598676.2 Updated not alive Link to Nucleotide Sequence:NM_133915.3Link to Protein Sequence:NP_598676.2Re-query CCDS DB by Nucleotide ID:NM_133915Re-query CCDS DB by Protein ID:NP_598676
Current member NCBI NM_133915.4 NP_598676.2 Accepted alive Link to Nucleotide Sequence:NM_133915.4Link to Protein Sequence:NP_598676.2Re-query CCDS DB by Nucleotide ID:NM_133915Re-query CCDS DB by Protein ID:NP_598676Link to BLAST:NP_598676.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598676.2 591 Q8VI36-1 591 99.8308% 0 1

Chromosomal Locations for CCDS 39229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115506856 115506868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115544343 115544569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115544881 115544996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115545372 115545508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115545604 115545805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115546813 115546948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115551488 115551589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115551851 115552021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115552104 115552277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115552764 115552845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115552978 115553126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115553869 115554135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGACGACCTCGATGCCCTGCTGGCAGACTTGGAATCTACCACCTCCCACATCTCCAAACGGCCAGTGT
TCTTGTCAGAGGAGCCCCCCTACTCCTACCCAACTGGAAACCACACATACCAGGAGATTGCGGTGCCACC
TCCGGTCCCACCACCACCGTCCAGCGAGGCCCTCAATGGCACGGTCCTGGACCCTTTAGATCAGTGGCAG
CCTAGTGGTTCCAGATACGCTCACCAGCAGCCTCCGTCCCCACTGCCCGTGTACAGCTCCAGTGCTAAAA
ATTCCAGTGCCTCCAACACCCAGGACGGCGTGGGCTCCCTTTGTTCCCGAGCAGGCGAGGAAGAGCACGT
CTACAGCTTCCCCAACAAGCAGAAGTCGGCAGAGCCCTCACCTACCGTCATGAGCTCCTCCCTGGGCAGC
AACCTCTCTGAACTTGACCGGCTGTTACTGGAGCTGAACGCAGTGCAGCACAGCCCGCCTGGCTTCCCTG
CAGATGAAGCCGAATCGAGCCCCCCCTTGCCTGGAGCCCTGAGCCCCCTTTATGGCATCCCAGAAAATAA
CACTCCCTTGGGGGGCAAAGCGGGGCCCCTGGTGAAAGAGAAGCCAAAGCGAAATGGAGGCCGGGGGCTG
GAGGATGTGCGGCCCAGCGTGGAGAGCCTCTTGGATGAACTGGAGAGTTCCGTGCCCAGCCCTGTCCCGG
CCATCACTGTGAACCAGGGAGAGATGAGCAGTCCGCAGCGAGTCACCTCCAGCCAGCAGCAGACCCGGAT
CTCGGCCTCCTCTGCCACCAGGGAGCTGGACGAGCTCATGGCGTCACTGTCAGATTTCAAGATGCAGGGC
CTGGAACAGAGAGTGGATGGAGAGCGGCCGTGGGCAGCCAGCTGGCCCCCCAGCAGCAGGCAGAGCAGCC
CCGAAGGGCAGGACGAGGGAGGGTTCATGGCCCAGGGGAAAACTGGGAGCAGCTCACCCCCTGGGGGACT
CTCCAAGCCCGGGAGCCAGCTGGACAGCATGTTGGGGAGTCTGCAGTCCGACCTGAACAAGCTAGGGGTC
GCCACCGTTGCCAAAGGGGTCTGTGGAGCCTGCAAGAAGCCCATCGCCGGGCAGGTCGTGACCGCCATGG
GGAAGACATGGCACCCCGAGCACTTTGTGTGCACCCACTGCCAGGAGGAGATTGGATCCCGAAACTTTTT
TGAGCGGGACGGACAGCCCTACTGTGAGAAGGACTACCACAGCCTCTTCTCCCCACGCTGCTACTACTGC
AACGGACCCATCCTGGATAAAGTGGTGACAGCGCTGGACCGCACATGGCACCCGGAACACTTCTTCTGTG
CCCAGTGTGGAGCCTTCTTTGGTCCAGAAGGCTTCCACGAGAAGGACGGCAAAGCGTACTGTCGTAAAGA
TTACTTCGACATGTTTGCTCCCAAGTGCGGCGGCTGCGCCCGTGCCATCCTGGAGAACTACATTTCAGCC
CTCAACACCCTCTGGCACCCCGAATGCTTTGTGTGCAGGGAGTGCTTCACACCCTTCGTCAACGGCAGCT
TCTTTGAGCACGACGGGCAGCCGTACTGTGAGGTCCACTACCACGAGCGGCGCGGCTCGCTGTGCTCCGG
CTGCCAGAAGCCCATCACGGGCCGCTGCATCACCGCCATGGCCAAGAAGTTCCACCCCGAGCATTTCGTG
TGCGCCTTTTGCCTGAAGCAGCTCAACAAGGGCACCTTCAAGGAGCAGAACGACAAACCCTACTGCCAGA
GCTGCTTCGTGAAGCTCTTCTGCTAG

Translation (591 aa):
MDDLDALLADLESTTSHISKRPVFLSEEPPYSYPTGNHTYQEIAVPPPVPPPPSSEALNGTVLDPLDQWQ
PSGSRYAHQQPPSPLPVYSSSAKNSSASNTQDGVGSLCSRAGEEEHVYSFPNKQKSAEPSPTVMSSSLGS
NLSELDRLLLELNAVQHSPPGFPADEAESSPPLPGALSPLYGIPENNTPLGGKAGPLVKEKPKRNGGRGL
EDVRPSVESLLDELESSVPSPVPAITVNQGEMSSPQRVTSSQQQTRISASSATRELDELMASLSDFKMQG
LEQRVDGERPWAASWPPSSRQSSPEGQDEGGFMAQGKTGSSSPPGGLSKPGSQLDSMLGSLQSDLNKLGV
ATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHSLFSPRCYYC
NGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISA
LNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAKKFHPEHFV
CAFCLKQLNKGTFKEQNDKPYCQSCFVKLFC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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