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Report for CCDS39245.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39245.1 Public Mus musculus 5 Oas1g 23 108 98 CCDS HistoryNCBI Gene:23960Re-query CCDS DB by CCDS ID:39245.1Re-query CCDS DB by GeneID:23960See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39245.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086368.11 ENSMUSP00000083555.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086368.11Link to Ensembl Protein Viewer:ENSMUSP00000083555.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000086368Re-query CCDS DB by Protein ID:ENSMUSP00000083555
Original member Current member NCBI NM_011852.3 NP_035982.2 Accepted alive Link to Nucleotide Sequence:NM_011852.3Link to Protein Sequence:NP_035982.2Re-query CCDS DB by Nucleotide ID:NM_011852Re-query CCDS DB by Protein ID:NP_035982Link to BLAST:NP_035982.2

Chromosomal Locations for CCDS 39245.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 120876995 120877027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120877183 120877209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120878321 120878474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120879100 120879332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120881885 120882069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120885773 120886061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 120887380 120887562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGAGCACGGACTCAGGAGCATCCCAGCCTGGACGCTGGACAAGTTCATAGAGGATTACCTCCTTCCCG
ACACCACCTTTGGTGCTGATGTCAAATCAGCCGTCAATGTCGTGTGTGATTTCCTGAAGGAGAGATGCTT
CCAAGGTGCTGCCCACCCAGTGAGGGTCTCCAAGGTGGTGAAGGGTGGCTCCTCAGGCAAAGGCACCACA
CTCAAGGGCAGGTCAGACGCTGACCTGGTGGTGTTCCTTAACAATCTCACCAGCTTTGAGGATCAGTTAA
ACCGACGGGGAGAGTTCATCAAGGAAATTAAGAAACAGCTGTACGAGGTTCAGCATGAGAGACGTTTTAG
AGTCAAGTTTGAGGTCCAGAGTTCATGGTGGCCCAACGCCCGGTCTCTGAGCTTCAAGCTGAGCGCCCCC
CATCTGCATCAGGAGGTGGAGTTTGATGTGCTTCCAGCCTTTGATGTCCTGGGTCATGGTAGTATCAATA
AGAAGCCTAATCCCTTAATCTACACCATCCTCATCTGGGAATGTACCTCCCTGGGGAAGGATGGCGAGTT
CTCTACCTGCTTCACGGAGCTCCAGCGGAACTTCCTGAAGCAGCGCCCAACCAAGCTGAAGAGTCTCATC
CGCCTGGTCAAACACTGGTACCAACTGTGTAAGGAGAAGCTGGGGAAGCCACTGCCCCCACAGTATGCCC
TGGAGCTACTCACTGTCTATGCCTGGGAACAGGGGAATGGATGTAATGAGTTCAACACAGCCCAGGGCTT
CCGGACCGTCTTGGAACTGGTCATCAATTATCAGCATCTTCGAATCTACTGGACAAAGTATTATGACTTT
CAACACAAGGAGGTCTCCAAATACCTGCACAGACAGCTCAGAAAAGCCAGGCCTGTGATCCTGGACCCAG
CTGACCCGACAGGGAATGTGGCTGGTGGGAACCCAGAGGGCTGGAGGCGGTTGGCTGAAGAGGCTGATGT
GTGGCTGTGGTACCCATGTTTTATGAAAAATGATGGTTCCCGAGTGAGCTCCTGGGATGTGCCGACGGTG
GTTCCTGTACCTTTTGAGCAGGTGGAGGAGAACTGGACATGTATCCTGCTGTGA

Translation (367 aa):
MEHGLRSIPAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKGTT
LKGRSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWPNARSLSFKLSAP
HLHQEVEFDVLPAFDVLGHGSINKKPNPLIYTILIWECTSLGKDGEFSTCFTELQRNFLKQRPTKLKSLI
RLVKHWYQLCKEKLGKPLPPQYALELLTVYAWEQGNGCNEFNTAQGFRTVLELVINYQHLRIYWTKYYDF
QHKEVSKYLHRQLRKARPVILDPADPTGNVAGGNPEGWRRLAEEADVWLWYPCFMKNDGSRVSSWDVPTV
VPVPFEQVEENWTCILL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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