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Report for CCDS39318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39318.1 Public Mus musculus 5 Por 23 108 98 CCDS HistoryNCBI Gene:18984Re-query CCDS DB by CCDS ID:39318.1Re-query CCDS DB by GeneID:18984See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005651.12 ENSMUSP00000005651.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005651.12Link to Ensembl Protein Viewer:ENSMUSP00000005651.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005651Re-query CCDS DB by Protein ID:ENSMUSP00000005651
Original member NCBI NM_008898.2 NP_032924.1 Updated not alive Link to Nucleotide Sequence:NM_008898.2Link to Protein Sequence:NP_032924.1Re-query CCDS DB by Nucleotide ID:NM_008898Re-query CCDS DB by Protein ID:NP_032924
Current member NCBI NM_008898.3 NP_032924.1 Accepted alive Link to Nucleotide Sequence:NM_008898.3Link to Protein Sequence:NP_032924.1Re-query CCDS DB by Nucleotide ID:NM_008898Re-query CCDS DB by Protein ID:NP_032924Link to BLAST:NP_032924.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032924.1 678 P37040 678 100% 0 0

Chromosomal Locations for CCDS 39318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135715885 135716063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135728662 135728710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135729399 135729527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135730229 135730378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135730844 135730968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135731093 135731182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135731563 135731661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135732483 135732599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135732686 135732804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135733502 135733683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135733773 135733922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135734027 135734297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135734383 135734528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135734621 135734706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135734813 135734957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2037 nt):
ATGGGGGACTCTCACGAAGACACCAGTGCCACAGTGCCTGAGGCAGTGGCTGAAGAAGTGTCTCTATTCA
GCACAACGGACATTGTTCTGTTTTCTCTCATCGTGGGGGTCCTGACCTACTGGTTCATCTTTAAAAAGAA
GAAAGAAGAGATACCGGAGTTCAGCAAGATCCAGACAACGGCCCCACCTGTCAAAGAGAGCAGCTTCGTG
GAAAAGATGAAGAAAACGGGAAGGAACATTATTGTATTCTATGGCTCCCAGACGGGAACCGCGGAGGAGT
TTGCCAACCGGCTGTCCAAGGATGCCCACCGCTATGGGATGCGGGGCATGTCTGCAGACCCTGAAGAGTA
TGACTTGGCCGACCTGAGCAGCCTGCCTGAGATCGACAAGTCCCTGGTAGTCTTCTGCATGGCCACATAC
GGAGAAGGCGACCCCACCGACAACGCGCAGGACTTCTATGATTGGCTGCAGGAGACTGACGTGGACCTCA
CGGGTGTCAAGTTTGCTGTGTTTGGTCTCGGGAACAAGACCTATGAGCACTTCAACGCCATGGGCAAGTA
TGTGGACCAGCGGCTGGAGCAGCTTGGCGCCCAGCGAATCTTTGAGTTGGGCCTTGGTGATGACGACGGG
AACTTGGAAGAGGATTTCATCACATGGAGGGAGCAGTTCTGGCCAGCTGTGTGCGAGTTCTTCGGGGTGG
AAGCCACTGGGGAGGAGTCGAGCATCCGCCAGTACGAGCTCGTGGTCCACGAAGACATGGACACAGCCAA
GGTGTACACGGGTGAGATGGGCCGTCTGAAGAGCTACGAGAACCAGAAACCCCCCTTCGATGCCAAGAAT
CCATTCCTGGCTGCTGTCACCACGAACCGGAAGCTGAACCAAGGCACTGAGAGGCATCTAATGCACCTGG
AATTGGACATCTCAGACTCCAAGATCAGGTATGAATCTGGAGATCACGTGGCTGTGTACCCAGCCAACGA
CTCCACCCTGGTCAACCAGATTGGGGAGATCCTGGGGGCTGACCTGGATGTCATCATGTCTCTAAACAAT
CTCGATGAGGAGTCGAATAAGAAGCATCCGTTCCCCTGCCCCACCACCTACCGCACGGCCCTCACCTACT
ACCTGGACATCACTAACCCGCCACGAACCAACGTGCTCTACGAGCTGGCCCAGTACGCCTCAGAGCCCTC
GGAGCAGGAACACCTGCACAAGATGGCGTCCTCCTCCGGCGAGGGCAAGGAGCTGTACCTGAGCTGGGTG
GTGGAGGCCCGGAGGCACATCCTAGCCATTCTCCAAGACTACCCGTCCCTGCGGCCACCCATCGACCACC
TGTGCGAGCTCCTCCCGAGGCTGCAGGCCCGCTACTATTCCATTGCCTCGTCGTCTAAGGTCCACCCCAA
CTCCGTGCACATCTGCGCCGTGGCTGTGGAGTATGAAGCGAAGTCTGGACGAGTGAACAAGGGGGTGGCC
ACCAGCTGGCTTCGGACCAAGGAACCAGCAGGAGAGAATGGCCGCCGGGCCCTGGTCCCCATGTTCGTCC
GCAAGTCCCAGTTCCGCTTGCCTTTCAAGCCCACCACACCTGTTATCATGGTGGGCCCCGGCACTGGGGT
TGCCCCTTTCATGGGCTTCATCCAGGAGCGGGCTTGGCTTCGAGAGCAAGGCAAGGAGGTCGGAGAGACG
CTGCTCTACTACGGCTGCCGGCGCTCGGATGAGGACTATCTGTACCGCGAGGAGCTGGCGCGCTTCCACA
AGGACGGCGCCCTCACGCAGCTTAATGTGGCCTTTTCCCGTGAGCAGGCCCACAAGGTCTATGTTCAGCA
CCTGCTCAAGAGGGACAAAGAGCACCTGTGGAAGCTGATCCACGAAGGTGGTGCCCACATCTATGTCTGC
GGGGATGCTCGAAATATGGCCAAAGATGTGCAGAACACATTCTATGACATCGTGGCCGAGTTTGGGCCCA
TGGAGCACACCCAGGCTGTGGACTATGTTAAGAAGCTCATGACCAAGGGCCGCTACTCGCTGGATGTATG
GAGCTAG

Translation (678 aa):
MGDSHEDTSATVPEAVAEEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTTAPPVKESSFV
EKMKKTGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATY
GEGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNKTYEHFNAMGKYVDQRLEQLGAQRIFELGLGDDDG
NLEEDFITWREQFWPAVCEFFGVEATGEESSIRQYELVVHEDMDTAKVYTGEMGRLKSYENQKPPFDAKN
PFLAAVTTNRKLNQGTERHLMHLELDISDSKIRYESGDHVAVYPANDSTLVNQIGEILGADLDVIMSLNN
LDEESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWV
VEARRHILAILQDYPSLRPPIDHLCELLPRLQARYYSIASSSKVHPNSVHICAVAVEYEAKSGRVNKGVA
TSWLRTKEPAGENGRRALVPMFVRKSQFRLPFKPTTPVIMVGPGTGVAPFMGFIQERAWLREQGKEVGET
LLYYGCRRSDEDYLYREELARFHKDGALTQLNVAFSREQAHKVYVQHLLKRDKEHLWKLIHEGGAHIYVC
GDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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