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Report for CCDS39435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39435.1 Public Mus musculus 6 Cped1 23 108 98 CCDS HistoryNCBI Gene:214642Re-query CCDS DB by CCDS ID:39435.1Re-query CCDS DB by GeneID:214642See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115383.8 ENSMUSP00000111041.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115383.8Link to Ensembl Protein Viewer:ENSMUSP00000111041.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115383Re-query CCDS DB by Protein ID:ENSMUSP00000111041
Original member NCBI NM_001081351.1 NP_001074820.1 Updated not alive Link to Nucleotide Sequence:NM_001081351.1Link to Protein Sequence:NP_001074820.1Re-query CCDS DB by Nucleotide ID:NM_001081351Re-query CCDS DB by Protein ID:NP_001074820
Current member NCBI NM_001081351.2 NP_001074820.1 Accepted alive Link to Nucleotide Sequence:NM_001081351.2Link to Protein Sequence:NP_001074820.1Re-query CCDS DB by Nucleotide ID:NM_001081351Re-query CCDS DB by Protein ID:NP_001074820Link to BLAST:NP_001074820.1

Chromosomal Locations for CCDS 39435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 21986811 21987059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22016903 22017086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22051293 22051399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22059877 22059952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22085030 22085162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22088689 22088857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22119462 22119604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22120984 22121056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22122257 22122424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22123552 22123656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22132229 22132386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22135847 22135917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22138660 22138710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22143944 22144130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22145519 22145687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22215512 22215629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22222404 22222540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22233445 22233665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22233908 22234009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22234631 22234718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22237596 22237742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 22254466 22254690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3081 nt):
ATGGTCTGTCGACCCGGGTTCCTTTGTCGCCGGCGATTTTGCCCCCGACCTTTCCTGGTGGGTTTGGTGG
TGGCGATCTGTCTCTTTTACCAGACCCTGACACTCCGAGGGACTAAGAAGATTGCAGCGGACGTCTCTGG
CACTGTCCCACACACACCCTCTCAAACTCAGGCTAGCAGATGTGAAGAAGGATACCGGCAGGACAAACAA
TGCTTCCTTCTCTCTGCGAGTACCCAGGAAACCAGGAAGATTGAAGAATCGATTGAGAGACACTTCGGCA
GTCTCAGCAGAAGGGCCGTCCTCCACAGGCCTCCTTCCTCCAGCAGAGCACAGCTTCAGATACACCAGCA
CCTTCTTGCTCAGCATGGATACAGCGTTGTCACTGTGGAAGAAAGGCTTGGTGGTGGTCTAGGTCCGGAG
CTGCTGGACCAAGGTGGTTTGAACTCCTGGGATCTGTTCATTTGCCTGCCTTCTAGGGAAGCTGATGGGA
AACCCTGCATACCCAGGGAGCACATGTGTCGACTAAGCCTACATCAAAGGGTAAATGTGTTACCAGAAAT
ACAGCCTCAGCTTTGCAGGAGAGAAGGCTTGTGTGAAATAACCAGAAGATTTCCAGAATTTCGACTTCCA
GTGAGTTCCTCTGTGTGCCTGGATCAGGAGACACAGTCACGGCTGAGGGTTTCCAGTCATCTCTCAAAAG
CAGAGAAGCCACATGTATGGAAACCTCGGGACTGGCACCGCAAACAGTTGAATCTGACTACAGTCGTTGC
CCCGCACGAAGCAATCTCCAGAGCAGAAGAGCTATCTGTGATTCTTAAGGCATATGTGTTGGTGACCTCC
TTAAGGCCTTTGCGGGCCTTCATTCATTCAACTGGCACGGTATGGAGCCCACCAAAGAAGAAACGCTTCA
CTGTCAAGCTGCAGATGTTTTTTGAGACATTCCTGAGGACCAGTTCGCCTCTGCAAGCACTGGACAGCAT
GAAGGAAGCCATTAGCAAGCTCCTGTTGGTAGCTGAGGTGTTTAGTGACGCATCTACTCTGGGACCAAAG
ACCTTCAATAGATGTATACAGTGTTTTCAGCTTTTAACCTTTGATGTTGGTTATGGAGATTCAGGATATC
CTGTGGTGCTCCAGGTACATGAACATTTACATTTTCACGATGATGAGAATTTCAGCGCGGAGGACCAAAA
TGCGGAAAATATTATTTTAAGGGATACTTTCGACTTCCTCTTCTCCAATGCGTCTTCACTGTCCATGGTT
TCTGAGATGTTGCAGAGGCGTGACTCAGCAGGTGCATTCGTGGACGGAAACTATGAAAAGGAATTAAATC
AGTGCCTGTCATTCGAGGAAATTCACTCAATTAGGACTTTTGTAAAGGAACTTGGGAGTTTGGGACAATT
CCAACTGCTCTTCCCGTCCAGTGTTCCTGGGATTCGGTCTCTGATGGGTGAATTTTATGATATGGCAACT
CCTGGCTCAGTCCTGTCGCAGTACTGGTCCCTTTTAAATGTATTTGAACAATTTTGGCTCATGAATAAAA
AGGCACAGCTACAGCCACTGGAATGGAATTCTCCGACAAGAAATGAGACCATTGAGGAACCACCCAGGTC
ACTGGAAGGAATCCAAAGTGGAAAAGATGCAGCTCCACGAGTTTTGTTCGAAAATAAAGATATACATTGC
AGTGATGAGGAAGATGTGCTCTGCCATATCAAGAAGATCATCACCCACCCCCGTTTAGAACTCAGTCCCG
AGTTTAATCCGAAGATCAAAGAGTATTACTGTGAAGTGCCATTCGATGTGCTAACTGTGAGGATCGGAGC
AGAGACCTCAAAGTGTCAGTGCAAGGCGCACCTGCAGGAGCAGGCAGGGCCAAGTTTTGCCACCTATCCT
CTGGGAATAGGAATGAACAGAATCTCTGTGCTTGTGGTGGACGAGTCTCACGCAGGGGGTGCCGCCCTAA
CCACGTATAAACTCACCATCTATAGAGAAGATCGCCCGAGTCTGCCCTTCTTCGAGGACTTCACAGCGTG
CGGCTTTGTACAAGATTGTGACTTATTGATTCACCCAGAAGAAACCTGTGGGTTGCAGCCTATTTCTGCA
GAATACATTAAAGCCATTTCACAGCCTGAAATAGAGAGTTGTCCATCTGGGGACACTAAAGGCCAGTGGA
TTGTGCCCTGCCTTACTTGTTCAGACAACAGGACCTGTGACTGGAGAGAAATAACCTGGCAACCACACAA
CTGCCAACACAACATTCTAACCAAGCCAGAACTTCAACAGTGCCTACAAGGAAGAAAGATTCTTTTCATA
GGAGATTCCACCAACAGAGGGATGATGTACTATCTAATCGAGAGACTGAATGAAACACTTCAGGAGTGGC
AGAAACTGCATGGCACTAAACTCTACCCCAGTGTCAATGGTGGGAAGAGTCCGATCAGTTACTCCTACTA
TCCCCAGTTCTGGATAAGGCCTTCATTGAGACCAGCATTTGAGAAAGCACTTGAACATCTCTTGCAAAGA
TCACAGCCCCTAGAGAATACTGACCAGACGGTATTGGTTGTTGGTGGTGTCCAGTGGCTTAATTCCAATC
ACCTGCAAATTATTCACAAGGTTTTAAAGAGGGAAAATTTGCTGAATATTCTAGTGATCATCAAAACATT
GGGGATTGGATTTCACCTGCCGGTGGACGGGGTGCACTTCCTAACCCAGGGTGAAGTACGGAACTTATAT
AAAGAAAATCTGAGCATTCTGGAAACTGCCAAAAAGTATGGCTATGAAGTAGTAGACACATTCACTATCA
CAATGGGACGGCACAAAGAATTTCTGCAGGGCAATTGTGGATGCCATTTTCATGAGGTAGTGAAATCAAA
GTTATCCAGACAGCACCACGTTATCAAGATGAAAAGATCCAAGAACCATATTGTGGGGAAGTACTTCAGT
AGTCAAAGCAAACTAAAACAACACAATTCTGTCCCAAATCTTCATTCACCGTATCATGTCAGAGGCCCGA
TAAACCAGGTTTGTGCTGAAATCCTGCTCAGCAGAATGTGTGCGAGTCAGAGGTCTGCGCAGGCGCCTTG
A

Translation (1026 aa):
MVCRPGFLCRRRFCPRPFLVGLVVAICLFYQTLTLRGTKKIAADVSGTVPHTPSQTQASRCEEGYRQDKQ
CFLLSASTQETRKIEESIERHFGSLSRRAVLHRPPSSSRAQLQIHQHLLAQHGYSVVTVEERLGGGLGPE
LLDQGGLNSWDLFICLPSREADGKPCIPREHMCRLSLHQRVNVLPEIQPQLCRREGLCEITRRFPEFRLP
VSSSVCLDQETQSRLRVSSHLSKAEKPHVWKPRDWHRKQLNLTTVVAPHEAISRAEELSVILKAYVLVTS
LRPLRAFIHSTGTVWSPPKKKRFTVKLQMFFETFLRTSSPLQALDSMKEAISKLLLVAEVFSDASTLGPK
TFNRCIQCFQLLTFDVGYGDSGYPVVLQVHEHLHFHDDENFSAEDQNAENIILRDTFDFLFSNASSLSMV
SEMLQRRDSAGAFVDGNYEKELNQCLSFEEIHSIRTFVKELGSLGQFQLLFPSSVPGIRSLMGEFYDMAT
PGSVLSQYWSLLNVFEQFWLMNKKAQLQPLEWNSPTRNETIEEPPRSLEGIQSGKDAAPRVLFENKDIHC
SDEEDVLCHIKKIITHPRLELSPEFNPKIKEYYCEVPFDVLTVRIGAETSKCQCKAHLQEQAGPSFATYP
LGIGMNRISVLVVDESHAGGAALTTYKLTIYREDRPSLPFFEDFTACGFVQDCDLLIHPEETCGLQPISA
EYIKAISQPEIESCPSGDTKGQWIVPCLTCSDNRTCDWREITWQPHNCQHNILTKPELQQCLQGRKILFI
GDSTNRGMMYYLIERLNETLQEWQKLHGTKLYPSVNGGKSPISYSYYPQFWIRPSLRPAFEKALEHLLQR
SQPLENTDQTVLVVGGVQWLNSNHLQIIHKVLKRENLLNILVIIKTLGIGFHLPVDGVHFLTQGEVRNLY
KENLSILETAKKYGYEVVDTFTITMGRHKEFLQGNCGCHFHEVVKSKLSRQHHVIKMKRSKNHIVGKYFS
SQSKLKQHNSVPNLHSPYHVRGPINQVCAEILLSRMCASQRSAQAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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