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Report for CCDS39580.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39580.2 Public Mus musculus 6 Shq1 23 108 98 CCDS HistoryNCBI Gene:72171Re-query CCDS DB by CCDS ID:39580.2Re-query CCDS DB by GeneID:72171See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 39580.1
The coding region has been updated to represent a splice variant that is more supported by the available conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 39580.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170667.7 ENSMUSP00000127797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170667.7Link to Ensembl Protein Viewer:ENSMUSP00000127797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170667Re-query CCDS DB by Protein ID:ENSMUSP00000127797
Original member Current member NCBI NM_181590.5 NP_853621.2 Accepted alive Link to Nucleotide Sequence:NM_181590.5Link to Protein Sequence:NP_853621.2Re-query CCDS DB by Nucleotide ID:NM_181590Re-query CCDS DB by Protein ID:NP_853621Link to BLAST:NP_853621.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_853621.2 569 Q7TMX5-1 569 100% 0 0

Chromosomal Locations for CCDS 39580.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 100573266 100573788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100611736 100611856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100630883 100631006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100632239 100632292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100636968 100637122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100648164 100648291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100655259 100655371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100664427 100664587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100665306 100665428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100669700 100669764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 100670919 100671061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGCTTACTCCTGCGTTCGAGCTGACCCAGGACTGCGACTTCCTCACCGTCGCCATCCGCGTGCCCCACG
CGCGCGCCTCTGAGTTCGACGTGTACTTCGAGGGGGTGGACTTCAAGTTCTACGCCAAGCCGTACTTTCT
GAGATTAACTCTGCCTGGAAGGATTGTGGAAAATGGATCTGAGCAGGGGACCTATGATGCAGATAAAGGA
ATTTTTACCATTCGATTGCCCAAGGAAACTCCTGGCCAACATTTTGAGGGGCTGAACATGTTAACTGCTC
TTCTGGCCCCGAGAAAATCCAGGTCTGCCAAGCCACTTGTGGAAGAAATAGGTGCTTCCGGGGTTGCTGA
GGAAGGAGCTGACGACGAGGATGAAGAGTTTGACTGGGAAATCGAGCAGACTCCCTATGAAGAGGTCTCA
GAAAGTACTCTGCAATCACAGTGTCACTATGGATTTGGAAACCTGCGGGCCGGTGTGGTTCAGCGGTTAC
AGGATGAGCTGAGTGAGGTTATCGATATTAAGGATCCAGATTTCACTCCTGTGACTGAACGGAGGCAGAA
GCGCCTGGCTGCTGAGTTGGCCAAATTTGATCCCGATCATTATCTAGCTGACTTCTTTGAAGACGAGGCA
GTTGAGCAGATTTTGAAGTACAGTCCTTGGTGGAATGATGCACATGCAGAAATGGTGGCCTCTTTGGGAA
AGAACCAAGAGCAAGGGGACTCTGCTGCATTAGTGTCTTTTTCAGAAGAGGAAAAATATCAGCTACGAAA
ATTTGTGAATAAGTCTTACCTGCTAGACAAGACGGCTCACCGTCAAGTGTACTATGGTTTGGTTGACATC
CTGCTGGCCTATTGCTATGAAGTACGTGTCACTGAAGGAGAGCACAGCGTTGAATCTGCGTGGACCATCA
GAAAGCTGAGTCCAACACTCTGCTGGTTTGAGACCTGGACAGACGTTCATGAAATCCTGGTGTCCTTTGG
AAGGAGAGTTTTGTGCTATCCACTTTATCGTCATTTCAAGCTGGTGCTGAAAGCCTACCGAGACACTATA
AAGATACTGCAACTAGGTAAGAGTGCAGTTTTAAAGTGTCTCCTGGATGTTCACAAAGTCTTTCAGGAAA
ATGACCCAGCATATATTCTGAATGATCTCTACATCTCAGACTACTGTGTATGGATTCAGAAGGCCAAGTC
CAAGAAGTTGGCTGCCCTAACCGAAGCCTTGAAAGCAGTCTCGCTCAGTAAGGCCCAGCTGGGGTTAGAG
TTGCCAGAACTGGAAGCCGCCGCACTCCTCGTCCAGGAGGAGGAAGGTGCTGGAAGAGCAGCCCAGTGCA
ATCCCTCGCATCAGGCTCCACACTCCAGTCCCGAGCCCAGTGACTCGGACAGCACCTCATCCTCTGGCAC
AGAGGACTCAGCGTCAGAGCAAGAGGAGCCTGCTGGGACCCAGCCCTCCCTGCTCACTTCTCTGCAAGCC
CCACTTTTGGAAGAGGACAGTGCCCTGATCATCAGGGAGAGTGGGCTCTGCAGAAACATGGCCAGCCAGG
GATGTGAAGTCAGTCAAGGACAGCCACTGGCCTCCGCCCGGGCTCCTCTCATAGAGGAGCTGGGAGATGC
GCTGAAGATGCTTCGGGTTTCCACACCTCACGGTGTCAGTGCTGGGAGCCACGGGAGTGTAGAGGATGCA
GAGGAGAGGGGTCAGGTGCCCTGCGATTGA

Translation (569 aa):
MLTPAFELTQDCDFLTVAIRVPHARASEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGSEQGTYDADKG
IFTIRLPKETPGQHFEGLNMLTALLAPRKSRSAKPLVEEIGASGVAEEGADDEDEEFDWEIEQTPYEEVS
ESTLQSQCHYGFGNLRAGVVQRLQDELSEVIDIKDPDFTPVTERRQKRLAAELAKFDPDHYLADFFEDEA
VEQILKYSPWWNDAHAEMVASLGKNQEQGDSAALVSFSEEEKYQLRKFVNKSYLLDKTAHRQVYYGLVDI
LLAYCYEVRVTEGEHSVESAWTIRKLSPTLCWFETWTDVHEILVSFGRRVLCYPLYRHFKLVLKAYRDTI
KILQLGKSAVLKCLLDVHKVFQENDPAYILNDLYISDYCVWIQKAKSKKLAALTEALKAVSLSKAQLGLE
LPELEAAALLVQEEEGAGRAAQCNPSHQAPHSSPEPSDSDSTSSSGTEDSASEQEEPAGTQPSLLTSLQA
PLLEEDSALIIRESGLCRNMASQGCEVSQGQPLASARAPLIEELGDALKMLRVSTPHGVSAGSHGSVEDA
EERGQVPCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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