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Report for CCDS39590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39590.1 Public Mus musculus 6 Srgap3 23 108 98 CCDS HistoryNCBI Gene:259302Re-query CCDS DB by CCDS ID:39590.1Re-query CCDS DB by GeneID:259302See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088373.10 ENSMUSP00000085712.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088373.10Link to Ensembl Protein Viewer:ENSMUSP00000085712.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000088373Re-query CCDS DB by Protein ID:ENSMUSP00000085712
Original member Current member NCBI NM_080448.4 NP_536696.4 Accepted alive Link to Nucleotide Sequence:NM_080448.4Link to Protein Sequence:NP_536696.4Re-query CCDS DB by Nucleotide ID:NM_080448Re-query CCDS DB by Protein ID:NP_536696Link to BLAST:NP_536696.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536696.4 1099 Q812A2 1099 99.909% 0 1

Chromosomal Locations for CCDS 39590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 112722788 112723201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112727213 112727540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112729649 112729798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112731329 112731509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112735834 112735913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112738883 112739110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112739319 112739424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112741361 112741495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112746892 112746969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112749362 112749422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112754571 112754673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112759749 112759776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112766868 112766952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112771367 112771564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112773598 112773699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112775499 112775720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112777020 112777148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112780873 112781058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112795773 112795835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112816591 112816753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112829439 112829631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 112946430 112946496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGTCATCTCAAACTAAGTTCAAGAAAGACAAAGAGATCATTGCTGAATATGAAGCCCAAATAAAAGAGA
TCCGCACGCAGCTGGTGGAGCAGTTCAAATGCCTGGAGCAGCAGTCCGAGTCGCGGCTGCAGCTGCTGCA
AGACTTGCAGGAGTTCTTCCGCAGGAAAGCTGAGATTGAGCTGGAGTATTCCCGAAGCCTGGAGAAGCTG
GCTGAGCGCTTCTCCTCCAAGATTCGCAGCTCCCGGGAGCACCAGTTCAAGAAGGATCAATACCTCCTCT
CGCCCGTGAACTGTTGGTATCTGGTACTGCATCAGACTCGGCGGGAGAGCCGAGACCATGCCACCCTCAA
CGACATCTTCATGAACAATGTCATCGTCCGCCTCTCCCAGATCAGTGAAGATGTCATCAGACTCTTCAAA
AAGAGCAAAGAGATTGGCCTGCAGATGCATGAGGAGCTGCTGAAGGTCACCAACGAGCTCTACACAGTCA
TGAAAACCTACCACATGTACCATGCAGAGAGCATCAGTGCAGAAAGCAAGCTGAAGGAGGCTGAGAAGCA
GGAGGAGAAACAGTTTAACAAGTCAGGAGAGCTAAGCATGAACCTGCTCCGGCACGAGGACAGACCCCAG
CGCCGCAGCTCCGTGAAGAAGATTGAGAAGATGAAGGAGAAGAGGCAGGCCAAGTATTCTGAGAACAAGC
TCAAGTGCACGAAGGCCCGGAATGATTACCTGCTGAATCTGGCAGCCACCAACGCAGCTATCAGCAAATA
CTACATCCACGATGTCTCTGATCTCATCGATTGCTGTGATTTGGGCTTTCACGCCAGCCTGGCCCGCACT
TTTCGGACCTACCTCTCAGCAGAATATAACCTGGAGACCTCTCGCCATGAGGGTCTGGACGTCATAGAGA
ATGCAGTGGACAACCTGGACTCCCGGAGTGACAAGCACACAGTCATGGATATGTGCAGCCAGGTCTTTTG
CCCTCCACTCAAGTTTGAGTTCCAGCCCCACATGGGGGATGAGGTCTGCCAGGTCAGTGCACAGCAGCCT
GTCCAGACAGAGCTGCTCATGCGGTACCACCAGCTGCAGTCCAGGCTGGCCACTCTCAAGATTGAGAATG
AAGAGGTTCGGAAAACCCTGGATGCCACCATGCAGACCTTACAGGACATGCTGACCGTGGAAGACTTCGA
TGTCTCTGACGCCTTCCAACACAGCCGATCTACAGAGTCCATAAAGTCAGCTGCTTCTGAGACCTACATG
AGCAAAATCAACATCGCCAAAAGGAGAGCCAACCAGCAGGAAACAGAAATGTTTTATTTTACAAAATTTA
AAGAATATGTGAATGGCAGTAACCTCATCACCAAGCTGCAAGCCAAGCATGACTTACTCAAGCAGACCCT
GGGTGAAGGGGAGAGAGCAGAGTGCGGCACGACCAGGCCCCCCTGTCTTCCCCCTAAACCACAGAAAATG
AGGAGACCTAGGCCTCTTTCAGTGTATAGCCATAAACTCTTTAACGGCAGTATGGAAGCGTTCATTAAGG
ATTCAGGACAAGCTATACCACTTGTAGTTGAGAGCTGTATTCGATTCATCAATTTATATGGACTCCAGCA
GCAGGGGATCTTCAGAGTTCCAGGGTCTCAGGTTGAAGTCAATGACATCAAGAATTCCTTTGAGAGAGGT
GAAGACCCCCTCGTGGATGACCAAAATGAGCGAGATATCAATTCAGTTGCTGGTGTTTTAAAACTGTATT
TCCGAGGACTGGAAAACCCACTCTTTCCTAAGGAAAGGTTTCAAGATTTGATATCTACTATTAAACTGGA
GAACCCAGCTGACAGGGTGCACCCAATCCAGCAGATCCTCATCACCCTGCCCCGCGTGGTCATTGTGGTC
ATGAGATACCTCTTTGCTTTCCTCAATCACCTTTCCCAGTACAGTGATGAGAACATGATGGATCCCTACA
ACTTGGCCATCTGCTTCGGGCCCACCCTCATGCACATCCCCGATGGGCAGGACCCTGTATCCTGCCAGGC
GCATGTCAATGAAGTCATCAAAACTATCATCATCCACCATGAAGCCATTTTCCCCAGCCCTCGGGAGCTA
GAGGGACCCGTGTACGAAAAATGCATGGCTGGAGGGGAAGAGTACTGTGACAGCCCACACAGTGAGCCGG
GGACCATTGATGAAGTTGACCATGACAATGGCACGGAGCCTCACACCAGTGACGAAGAAGTGGAGCAGAT
TGAGGCCATCGCCAAGTTTGACTATGTGGGGCGGTCCCCTCGTGAACTATCCTTCAAAAAAGGGGCCTCA
CTACTCCTGTATCACCGTGCCTCAGAGGACTGGTGGGAGGGCCGCCACAACGGTGTAGATGGACTCATCC
CTCATCAGTACATAGTTGTACAGGACATGGACGATGCCTTCTCCGATAGCCTGAGCCAAAAGGCTGACAG
CGAGGCCAGCAGTGGGCCACTGCTGGATGACAAGGCCTCTTCCAAGAATGACCTCCAGTCCCCCACAGAG
CACATCTCTGATTACGGCTTTGGGGGGGTGATGGGCCGAGTGCGACTACGGTCCGACGGAGCAGCCATCC
CCAGGCGCCGAAGTGGGGGCGACACACACAGCCCACCCCGGGGCTTGGGTCCCAGCATAGACACGCCACC
CCGAGCTGCTGCCTGCCCCAGCAGCCCCCACAAAATCCCCCTCAGCCGGGGACGGATCGAGAGCCCTGAG
AAGAGAAGGATGGCGACTTTCGGGAGCGCTGGCAGTATCAACTACCCTGACAAGAAGGCGCTGACAGAAG
GGCTCTCCATGAGGTCGACTTGCGGTTCCACGCGACACAGCAGCCTAGGGGACCACAAGTCCCTGGAGGC
TGAGGCCCTGGCAGAAGACATCGAGAAGACCATGAGCACCGCTCTGCATGAGTTGCGGGAACTTGAGAGA
CAGAACACTGTCAAGCAGGCACCAGATGTGGTGCTGGACACCCTGGAGCCCCTGAAGAATCCACCAGGCC
CCATCAGCTCAGAGCCCGCCAGCCCCCTGCACACCATTGTCATCCGAGACCCTGATGCTGCTATGCGCCG
AAGCAGCAGCTCATCGACGGAGATGATGACCACCTTCAAGCCAGCCCTGTCAGCTCGCCTGGCTGGTGCC
CAGCTGCGTCCGCCCCCCATGCGTCCGGTCAGACCTGTGGTTCAGCACCGATCCAGCAGCAGCAGCAGCT
CAGGTGTGGGCAGCCCGGCAGTGACACCCACGGAGAAGATGTTCCCTAATAGCTCCTCGGACAAGTCTGG
CACCATGTGA

Translation (1099 aa):
MSSQTKFKKDKEIIAEYEAQIKEIRTQLVEQFKCLEQQSESRLQLLQDLQEFFRRKAEIELEYSRSLEKL
AERFSSKIRSSREHQFKKDQYLLSPVNCWYLVLHQTRRESRDHATLNDIFMNNVIVRLSQISEDVIRLFK
KSKEIGLQMHEELLKVTNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQFNKSGELSMNLLRHEDRPQ
RRSSVKKIEKMKEKRQAKYSENKLKCTKARNDYLLNLAATNAAISKYYIHDVSDLIDCCDLGFHASLART
FRTYLSAEYNLETSRHEGLDVIENAVDNLDSRSDKHTVMDMCSQVFCPPLKFEFQPHMGDEVCQVSAQQP
VQTELLMRYHQLQSRLATLKIENEEVRKTLDATMQTLQDMLTVEDFDVSDAFQHSRSTESIKSAASETYM
SKINIAKRRANQQETEMFYFTKFKEYVNGSNLITKLQAKHDLLKQTLGEGERAECGTTRPPCLPPKPQKM
RRPRPLSVYSHKLFNGSMEAFIKDSGQAIPLVVESCIRFINLYGLQQQGIFRVPGSQVEVNDIKNSFERG
EDPLVDDQNERDINSVAGVLKLYFRGLENPLFPKERFQDLISTIKLENPADRVHPIQQILITLPRVVIVV
MRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMHIPDGQDPVSCQAHVNEVIKTIIIHHEAIFPSPREL
EGPVYEKCMAGGEEYCDSPHSEPGTIDEVDHDNGTEPHTSDEEVEQIEAIAKFDYVGRSPRELSFKKGAS
LLLYHRASEDWWEGRHNGVDGLIPHQYIVVQDMDDAFSDSLSQKADSEASSGPLLDDKASSKNDLQSPTE
HISDYGFGGVMGRVRLRSDGAAIPRRRSGGDTHSPPRGLGPSIDTPPRAAACPSSPHKIPLSRGRIESPE
KRRMATFGSAGSINYPDKKALTEGLSMRSTCGSTRHSSLGDHKSLEAEALAEDIEKTMSTALHELRELER
QNTVKQAPDVVLDTLEPLKNPPGPISSEPASPLHTIVIRDPDAAMRRSSSSSTEMMTTFKPALSARLAGA
QLRPPPMRPVRPVVQHRSSSSSSSGVGSPAVTPTEKMFPNSSSDKSGTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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