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Report for CCDS39628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39628.1 Public Mus musculus 6 Ptpn6 23 108 98 CCDS HistoryNCBI Gene:15170Re-query CCDS DB by CCDS ID:39628.1Re-query CCDS DB by GeneID:15170See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112484.9 ENSMUSP00000108103.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112484.9Link to Ensembl Protein Viewer:ENSMUSP00000108103.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000112484Re-query CCDS DB by Protein ID:ENSMUSP00000108103
Original member Current member NCBI NM_013545.3 NP_038573.2 Accepted alive Link to Nucleotide Sequence:NM_013545.3Link to Protein Sequence:NP_038573.2Re-query CCDS DB by Nucleotide ID:NM_013545Re-query CCDS DB by Protein ID:NP_038573Link to BLAST:NP_038573.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038573.2 595 P29351-1 595 100% 0 0

Chromosomal Locations for CCDS 39628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124721108 124721222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124721576 124721667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124721763 124721914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124722011 124722078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124724957 124725111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124725227 124725358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124727385 124727534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124727716 124727795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124728112 124728208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124728337 124728450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124728548 124728664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124728781 124728970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124732300 124732494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124732738 124732860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124732946 124732953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1788 nt):
ATGGTGAGGTGGTTTCACCGGGACCTCAGCGGGCCTGATGCAGAGACCCTGCTGAAGGGCCGGGGAGTCC
CTGGGAGCTTCCTGGCTCGGCCCAGCCGCAAGAACCAGGGTGACTTCTCCCTCTCAGTCAGGGTGGATGA
TCAGGTGACTCATATTCGGATCCAGAACTCAGGGGACTTCTATGACCTGTACGGAGGGGAGAAGTTTGCG
ACGCTGACAGAGCTGGTCGAGTATTACACGCAGCAGCAGGGCATCCTGCAGGACCGAGATGGCACCATCA
TCCACCTTAAGTACCCACTGAACTGCTCGGACCCCACCAGTGAGAGGTGGTACCACGGCCACATATCTGG
AGGGCAGGCGGAGTCACTGCTGCAGGCCAAGGGCGAGCCCTGGACATTTCTTGTGCGTGAGAGTCTCAGC
CAACCTGGTGATTTTGTGCTCTCTGTGCTCAATGACCAGCCCAAGGCTGGCCCAGGTTCCCCGCTCAGGG
TCACTCATATCAAGGTTATGTGTGAGGGTGGACGCTATACTGTGGGTGGCTCAGAGACGTTTGACAGCCT
CACAGACCTGGTGGAGCACTTCAAGAAGACAGGGATTGAGGAGGCCTCGGGTGCCTTTGTCTACCTGCGG
CAGCCTTACTACGCTACTCGGGTAAACGCAGCTGACATTGAGAATCGGGTCTTGGAACTGAACAAGAAGC
AGGAGTCGGAGGACACAGCCAAGGCTGGCTTCTGGGAGGAGTTTGAGAGTCTACAAAAGCAGGAGGTAAA
GAATCTACACCAACGTCTGGAAGGGCAGCGGCCAGAGAACAAGAGCAAGAACCGCTACAAGAACATTCTT
CCCTTTGACCACAGCCGAGTGATCCTGCAGGGACGTGACAGTAACATCCCAGGCTCTGACTACATCAATG
CCAACTACGTGAAGAACCAGCTGCTAGGTCCAGATGAGAACTCTAAGACCTACATCGCCAGCCAGGGCTG
TCTGGATGCCACAGTCAATGACTTCTGGCAGATGGCTTGGCAGGAGAACACTCGTGTCATCGTCATGACT
ACCAGAGAGGTGGAGAAAGGCCGGAACAAATGTGTCCCATACTGGCCCGAGGTGGGCACTCAGCGTGTCT
ATGGTCTCTACTCTGTGACCAACAGTAGGGAGCATGACACAGCAGAATACAAACTGCGAACATTACAGAT
CTCCCCACTAGACAATGGGGACCTGGTTCGGGAGATATGGCACTACCAGTACCTGAGCTGGCCTGACCAT
GGGGTTCCCAGTGAGCCTGGGGGTGTCCTCAGCTTTCTGGATCAGATCAACCAGCGACAGGAAAGTTTGC
CTCATGCAGGGCCCATCATTGTGCATTGCAGCGCTGGCATCGGCCGCACGGGCACCATCATCGTCATTGA
TATGCTTATGGAAAGCATCTCCACCAAGGGGCTAGACTGTGACATTGATATCCAGAAGACCATCCAGATG
GTACGAGCACAGCGCTCCGGCATGGTGCAGACCGAGGCCCAGTACAAGTTTATTTACGTGGCCATTGCCC
AGTTCATCGAAACGACCAAGAAGAAACTGGAGATCATACAATCCCAGAAGGGCCAGGAGTCGGAGTATGG
GAATATCACGTACCCTCCCGCTGTGAGGAGTGCCCACGCCAAAGCCTCGCGTACTTCCTCCAAGCACAAG
GAGGAGGTGTACGAAAACGTGCATAGCAAGAGCAAGAAGGAAGAGAAAGTAAAGAAGCAGCGGTCGGCAG
ACAAGGAGAAGAACAAAGGTTCTCTCAAGAGGAAGTGA

Translation (595 aa):
MVRWFHRDLSGPDAETLLKGRGVPGSFLARPSRKNQGDFSLSVRVDDQVTHIRIQNSGDFYDLYGGEKFA
TLTELVEYYTQQQGILQDRDGTIIHLKYPLNCSDPTSERWYHGHISGGQAESLLQAKGEPWTFLVRESLS
QPGDFVLSVLNDQPKAGPGSPLRVTHIKVMCEGGRYTVGGSETFDSLTDLVEHFKKTGIEEASGAFVYLR
QPYYATRVNAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKSKNRYKNIL
PFDHSRVILQGRDSNIPGSDYINANYVKNQLLGPDENSKTYIASQGCLDATVNDFWQMAWQENTRVIVMT
TREVEKGRNKCVPYWPEVGTQRVYGLYSVTNSREHDTAEYKLRTLQISPLDNGDLVREIWHYQYLSWPDH
GVPSEPGGVLSFLDQINQRQESLPHAGPIIVHCSAGIGRTGTIIVIDMLMESISTKGLDCDIDIQKTIQM
VRAQRSGMVQTEAQYKFIYVAIAQFIETTKKKLEIIQSQKGQESEYGNITYPPAVRSAHAKASRTSSKHK
EEVYENVHSKSKKEEKVKKQRSADKEKNKGSLKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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