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Report for CCDS39631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39631.1 Public Mus musculus 6 Zfp384 23 108 98 CCDS HistoryNCBI Gene:269800Re-query CCDS DB by CCDS ID:39631.1Re-query CCDS DB by GeneID:269800See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084275.11 ENSMUSP00000081296.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084275.11Link to Ensembl Protein Viewer:ENSMUSP00000081296.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000084275Re-query CCDS DB by Protein ID:ENSMUSP00000081296
Original member Current member EBI ENSMUST00000088308.9 ENSMUSP00000085648.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088308.9Link to Ensembl Protein Viewer:ENSMUSP00000085648.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000088308Re-query CCDS DB by Protein ID:ENSMUSP00000085648
Original member Current member EBI ENSMUST00000112427.7 ENSMUSP00000108046.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112427.7Link to Ensembl Protein Viewer:ENSMUSP00000108046.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112427Re-query CCDS DB by Protein ID:ENSMUSP00000108046
Current member NCBI NM_001372422.1 NP_001359351.1 Accepted alive Link to Nucleotide Sequence:NM_001372422.1Link to Protein Sequence:NP_001359351.1Re-query CCDS DB by Nucleotide ID:NM_001372422Re-query CCDS DB by Protein ID:NP_001359351Link to BLAST:NP_001359351.1
Current member NCBI NM_001372424.1 NP_001359353.1 Accepted alive Link to Nucleotide Sequence:NM_001372424.1Link to Protein Sequence:NP_001359353.1Re-query CCDS DB by Nucleotide ID:NM_001372424Re-query CCDS DB by Protein ID:NP_001359353Link to BLAST:NP_001359353.1
Original member Current member NCBI NM_175557.5 NP_780766.3 Accepted alive Link to Nucleotide Sequence:NM_175557.5Link to Protein Sequence:NP_780766.3Re-query CCDS DB by Nucleotide ID:NM_175557Re-query CCDS DB by Protein ID:NP_780766Link to BLAST:NP_780766.3

Chromosomal Locations for CCDS 39631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125023684 125023749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125024033 125024270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125024505 125024552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125024746 125025082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125030798 125031022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125031671 125031853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125033240 125033318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125035713 125035871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125036306 125036725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1755 nt):
ATGGAAGAGTCTCACTTCAATTCTAACCCGTACTTCTGGCCTTCTATCCCCACAGTCTCAGGGCAGATTG
AAAACACTATGTTCATCAACAAGATGAAGGATCAGCTGTTGCCAGAGAAGGGCTGTGGACTGGCGCCACC
TCACTATCCCACTTTGCTAACTGTCCCTGCCTCAGTGTCCCTGTCCTCTGGCATCAGCATGGACACAGAG
TCCAAGTCAGAACAGCTGACCCCACACAGTCAGGCATCTGTTACCCAGAATATCACAGTGGTTCCTGTAC
CATCTACAGGACTCATGACTGCGGGAGTCTCCTGTTCTCAGAGGTGGAGAAGAGAAGGGAGTCAATCAAG
GGGTCCTGGTTTGGTAATCACATCCCCGTCAGGCTCTCTTGTGACCACAGCCTCCGCAGCTCAGACTTTC
CCTATTTCGGCTCCCATGATTGTCTCAGCTCTTCCCCCGGGCTCGCAAGCCCTACAGGTGGTCCCTGACC
TCTCCAAGAAGGTAGCGTCAACCCTAACTGAGGAAGGAGGCGGAGGTGGTGGTGGAGGTGGCACTGTGGC
TCCTCCTAAACCTCCTCGGGGCCGCAAGAAGAAGCGGATGCTGGAGTCAGGGCTTCCTGAGATGAATGAC
CCTTACGTCCTTGCCCCTGGGGATGACGATGACCATCAGAAAGATGGCAAGACCTACAGGTGCCGGATGT
GCTCCCTGACCTTCTACTCCAAGTCGGAGATGCAGATCCACTCCAAGTCACACACCGAGACCAAGCCCCA
CAAGTGCCCGCACTGCTCCAAGACCTTCGCCAACAGCTCCTACCTGGCCCAGCACATCCGGATCCACTCA
GGGGCCAAGCCCTATAGTTGTAACTTCTGTGAGAAATCCTTCCGCCAGCTCTCACATCTGCAGCAGCACA
CCCGGATTCACTCCAAGATGCACACGGAGACCATCAAGCCCCACAAGTGCCCGCACTGCTCCAAGACCTT
CGCCAACACCTCCTACCTGGCTCAGCACCTCCGTATCCACTCAGGGGCCAAGCCCTACAACTGCTCCTAC
TGCCAGAAGGCCTTCCGCCAGCTCTCCCACCTCCAGCAGCACACACGAATCCACACTGGTGATAGACCAT
ACAAATGTGCACACCCGGGCTGTGAGAAGGCTTTCACACAACTCTCCAATCTGCAGTCTCACAGACGGCA
GCACAACAAAGATAAACCCTTCAAGTGCCACAACTGTCACCGAGCATATACAGACGCAGCCTCTCTCGAG
GCTCACTTATCTACACACACAGTGAAACACGCCAAGGTTTATACCTGCACAATCTGCAGTCGGGCATATA
CATCAGAAACATACCTTATGAAACATATGCGCAAACACAACCCTCCTGATCTTCAACAGCAAGTGCAAGC
AGCGGCAGCAGCAGCAGCGGTGGCCCAGGCCCAGGCCCAGGCTCAGGCCCAAGCTCAAGCCCAGGCCCAA
GCTCAAGCCCAGGCCCAAGCTCAAGCCCAGGCCCAGGCCCAGGCCCAGGCCCAGGCTTCACAGGCGTCAC
AGCAGCAGCAGCAGCAGCAGCCACCGCCACAACCACCACACTTCCAGTCCCCTGGGGCAGCTCCCCAGGG
AGGGGGTGGTGGGGACAGCAACCCGAACCCTCCACCCCAGTGTTCCTTTGACTTGACCCCCTATAAGCCG
GCAGAGCATCATAAAGACATCTGCCTCACTGTCACCACCAGCACCATCCAGGTGGAGCACCTGGCCAGCT
CTTAG

Translation (584 aa):
MEESHFNSNPYFWPSIPTVSGQIENTMFINKMKDQLLPEKGCGLAPPHYPTLLTVPASVSLSSGISMDTE
SKSEQLTPHSQASVTQNITVVPVPSTGLMTAGVSCSQRWRREGSQSRGPGLVITSPSGSLVTTASAAQTF
PISAPMIVSALPPGSQALQVVPDLSKKVASTLTEEGGGGGGGGGTVAPPKPPRGRKKKRMLESGLPEMND
PYVLAPGDDDDHQKDGKTYRCRMCSLTFYSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHIRIHS
GAKPYSCNFCEKSFRQLSHLQQHTRIHSKMHTETIKPHKCPHCSKTFANTSYLAQHLRIHSGAKPYNCSY
CQKAFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHRRQHNKDKPFKCHNCHRAYTDAASLE
AHLSTHTVKHAKVYTCTICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQ
AQAQAQAQAQAQAQAQAQASQASQQQQQQQPPPQPPHFQSPGAAPQGGGGGDSNPNPPPQCSFDLTPYKP
AEHHKDICLTVTTSTIQVEHLASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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