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Report for CCDS39638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39638.1 Public Mus musculus 6 Cd27 23 108 98 CCDS HistoryNCBI Gene:21940Re-query CCDS DB by CCDS ID:39638.1Re-query CCDS DB by GeneID:21940See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112282.2 ENSMUSP00000107901.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112282.2Link to Ensembl Protein Viewer:ENSMUSP00000107901.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112282Re-query CCDS DB by Protein ID:ENSMUSP00000107901
Original member Current member NCBI NM_001042564.1 NP_001036029.1 Accepted alive Link to Nucleotide Sequence:NM_001042564.1Link to Protein Sequence:NP_001036029.1Re-query CCDS DB by Nucleotide ID:NM_001042564Re-query CCDS DB by Protein ID:NP_001036029Link to BLAST:NP_001036029.1

Chromosomal Locations for CCDS 39638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125233310 125233431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125233642 125233761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125234254 125234316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125236757 125236892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGCATGGCCACCTCCCTACTGGCTCTGCATGCTGGGGACCTTGGTAGGACTCTCAGCTACCCTAGCCC
CAAACAGCTGTCCAGACAAACACTACTGGACTGGGGGAGGACTCTGCTGCCGGATGTGTGAGCCAGAGAA
GCCATCCTGGCCCCTACACAGGCAGCTTCCCAACTCGACTGTCTATAGCCAGCGGTCATCCCATAGACCC
CTGTGCAGCTCGGACTGCATCCGGATCTTTGTGACCTTCTCCAGCATGTTTCTTATCTTCGTCCTGGGTG
CAATCTTGTTCTTCCATCAAAGAAGAAACCACGGGCCAAATGAAGACCGGCAGGCAGTGCCTGAAGAGCC
TTGTCCTTACAGCTGCCCCAGGGAAGAGGAGGGCAGTGCTATCCCTATCCAGGAGGACTACCGGAAACCC
GAGCCTGCTTTCTACCCTTGA

Translation (146 aa):
MAWPPPYWLCMLGTLVGLSATLAPNSCPDKHYWTGGGLCCRMCEPEKPSWPLHRQLPNSTVYSQRSSHRP
LCSSDCIRIFVTFSSMFLIFVLGAILFFHQRRNHGPNEDRQAVPEEPCPYSCPREEEGSAIPIQEDYRKP
EPAFYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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