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Report for CCDS39656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39656.1 Public Mus musculus 6 Clec2e 23 108 98 CCDS HistoryNCBI Gene:232409Re-query CCDS DB by CCDS ID:39656.1Re-query CCDS DB by GeneID:232409See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032258.7 ENSMUSP00000032258.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032258.7Link to Ensembl Protein Viewer:ENSMUSP00000032258.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032258Re-query CCDS DB by Protein ID:ENSMUSP00000032258
Original member Current member NCBI NM_153506.4 NP_705726.3 Accepted alive Link to Nucleotide Sequence:NM_153506.4Link to Protein Sequence:NP_705726.3Re-query CCDS DB by Nucleotide ID:NM_153506Re-query CCDS DB by Protein ID:NP_705726Link to BLAST:NP_705726.3

Chromosomal Locations for CCDS 39656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129093406 129093550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129094367 129094473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129095016 129095200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129098363 129098488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129100786 129100873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGAGTGCTGCAAAGGTTGAAGAGGCTTCCATGGGCATGCTGAAGACAGACCTCACTGCCCCAGACTGCC
TGCAGGAGGGAGAAATGGGTAAAAAACTCCAAGCAAAATGTCTCGGAATCATCTCCGCTGCATCTTGTGT
TAAACTTTACTGCTGCTATGGAGTGATCATGGTCCTTACTGTAGCTGTAGTTGCTCTTTCTGTTACTTTG
TCAGTGAGAAAGAAAAAACCAGTCATGGAGAGCTGTGAACCTTGCTATGCTGTATGCTCAAGTGGCTGGA
TTGGATTTGGAAATAAATGCTTTTATTTTTCTGAAGACATGGGAAACTGGACATTCAGTCAGTCCTCCTG
CATAGCACTAGATGCCCATCTAGCTCTATTTGACAGCTTGGAGGAACTGAATTTTCTGAAGAGATACAAG
GGGGCTTCTGACCACTGGATTGGACTACACAGAGAGTCTTCAGAACACCCTTGGATATGGACAGACAACA
CTGAGTATAACAACTTGGTTCTCACCCGAGGAGGAGGAGAATGTGCCTACTTGAGTAACAGGGGGATCTA
CAACAGCAGTGGGGATATACATAAAAAATGGATTTGTAACAAGCCCAACAACTACACCTTACAGCGCCCA
CTAATTGTAAATCCCGGATAG

Translation (216 aa):
MSAAKVEEASMGMLKTDLTAPDCLQEGEMGKKLQAKCLGIISAASCVKLYCCYGVIMVLTVAVVALSVTL
SVRKKKPVMESCEPCYAVCSSGWIGFGNKCFYFSEDMGNWTFSQSSCIALDAHLALFDSLEELNFLKRYK
GASDHWIGLHRESSEHPWIWTDNTEYNNLVLTRGGGECAYLSNRGIYNSSGDIHKKWICNKPNNYTLQRP
LIVNPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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