NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39695.1 Public Mus musculus 6 Recql 23 108 98 CCDS HistoryNCBI Gene:19691Re-query CCDS DB by CCDS ID:39695.1Re-query CCDS DB by GeneID:19691See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111803.8 ENSMUSP00000107434.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111803.8Link to Ensembl Protein Viewer:ENSMUSP00000107434.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111803Re-query CCDS DB by Protein ID:ENSMUSP00000107434
Original member NCBI NM_001355511.1 NP_001342440.1 Updated not alive Link to Nucleotide Sequence:NM_001355511.1Link to Protein Sequence:NP_001342440.1Re-query CCDS DB by Nucleotide ID:NM_001355511Re-query CCDS DB by Protein ID:NP_001342440
Current member NCBI NM_001355511.2 NP_001342440.1 Accepted alive Link to Nucleotide Sequence:NM_001355511.2Link to Protein Sequence:NP_001342440.1Re-query CCDS DB by Nucleotide ID:NM_001355511Re-query CCDS DB by Protein ID:NP_001342440Link to BLAST:NP_001342440.1
Original member NCBI NM_023042.3 NP_075529.2 Updated not alive Link to Nucleotide Sequence:NM_023042.3Link to Protein Sequence:NP_075529.2Re-query CCDS DB by Nucleotide ID:NM_023042Re-query CCDS DB by Protein ID:NP_075529
Current member NCBI NM_023042.4 NP_075529.2 Accepted alive Link to Nucleotide Sequence:NM_023042.4Link to Protein Sequence:NP_075529.2Re-query CCDS DB by Nucleotide ID:NM_023042Re-query CCDS DB by Protein ID:NP_075529Link to BLAST:NP_075529.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342440.1 648 Q9Z129-1 648 100% 0 0
NP_075529.2 648 Q9Z129-1 648 100% 0 0

Chromosomal Locations for CCDS 39695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 142362720 142362869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142363547 142363676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142364436 142364655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142365516 142365607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142366667 142366805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142367274 142367391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142367481 142367629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142368473 142368554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142369291 142369457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142372816 142373014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142374820 142374926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142376781 142376960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142378153 142378350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 142384529 142384544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGCATCCGTCTCAGCTTTGACAGAGGAACTGGAATCCGTAGCCAGTGAGCTTCATGCCATTGACATCC
AGATTCAGGAACTCACAGAGAGGCGGCAAGAGCTCCTTCAGAGAAAGTCAGTCCTGACAGGGAAAATCAA
ACAGTACTTGGAGGACTCTTCGGCTGAGGCGAGCAGCGACTTGGACACATCACCAGCTGCTTGGAATAAA
GAAGATTTTCCATGGTTCGGAAAGGTAAAAGATGTGCTGCAAAATGTTTTTAAACTGCAAAAATTCAGAC
CTCTGCAGCTGGAAACCATCAATGTCACCATGGCTAGAAAGGATATCTTTCTTGTCATGCCCACAGGAGG
AGGGAAGAGCTTATGCTACCAGCTACCTGCGCTGTGCTCAGACGGTTTTACACTTGTGATTTGCCCACTC
ATCTCTCTTATGGAAGATCAGCTGATGGTTTTAAAACAGTTGGGAATTTCAGCTACTATGTTGAATGCTT
CCAGCTCTAAGGAACATGTAAAATGGGTGCACGCTGAAATGGTGAATAAAAACTCCCAGTTAAAGCTGAT
TTATGTAACTCCAGAGAAAATTGCAAAAAGCAAGATGTTCATGTCAAGACTGGAGAAAGCCTATGAAGCC
GGGAGGCTGACGGGAGCGGCAGTGGATGAAGTGCATTGCTGCAGTCAGTGGGGTCATGACTTCAGGCCTG
ATTATAAGGCTCTTGGCATCTTGAAGCGCCAGTTTCCCAACGCCTCACTGATGGGGCTGACTGCAACAGC
AACCAACCATGTTCTGAAGGATGTACAGAAAATCCTGTGTGTGGGAAAGTGTTTGACTTTTACAGCGTCT
TTCAACCGGCCAAATCTTTTTTATGAGGTTCGGCAAAAGCCCTCAAGTGCTGAAGACTTTACTGAGGACA
TTGTCAAGCTAATTAATGGACGGTACAAAGGACAATCAGGAATCATATACTGTTTCTCTCAGAAAGACTC
TGAACAAATTACCATCAGTTTACAGAAGTTGGGAATTCATGCAGGCACTTACCATGCCAATATGGAACCA
GAAGATAAGACCAAGGTTCATACACAGTGGTCAGCCAATGAGCTTCAGGTGGTAGTGGCAACAGTCGCAT
TTGGCATGGGAATTGATAAGCCAGACGTGAGGTTTGTCATCCATCATTCAATGAGCAAATCCATGGAGAA
TTACTATCAAGAGAGCGGGCGTGCCGGTCGCGATGACTCGAGAGCAGACTGTATTCTGTATTACGGCTTT
GGGGACATATTCAGGATCAGCTCGATGGTGGTCATGGAGAACGTGGGGCAGCAGAAGCTGTATGAGATGG
TGTCATACTGCCAGAATGTCAGCAAGTGTCGCCGTGTGTTAATAGCACAGCATTTTGATGAAGTGTGGAA
CGCAGATGCCTGTAACAAAATGTGTGACAACTGCTGTAAAGACGTTTCGTTTGAGAAAAAGAATGTGACA
CAGCACTGCCGGGACCTGATAAAGATTCTGAAGCAGGCTGAAGGCCTGAATGAAAAGCTGACCCCGCTGA
AGCTGATTGATGCTTGGATGGGAAAGGGAGCAGCCAAGTTGAGAGTGGCTGGCGTTGTTGCCCCGGCCCT
TCCCCGGGAAGACCTGGAGAGAATCGTCGCCCACGCCCTCCTGCAGCAATATCTCAAAGAAGACTACAGC
TTCACGGCTTACGCCACCATCTCCTATCTGAAGGTGGGACCCAGAGCTTGTCTTCTCAGCAACGAAGCCC
ATGCTGTCACTATGCAAGTGAAGAAGTCAGCACAGAGCAGCGTTAGGGGTGCACTGTCTGAAGCTCGTCA
GGTGGAACAAGTGGATTCGAAGGGGGAAGAGCAAAGCTCAGGTAACTCCCAGAAGTCTAAAAGCAGGCTT
CAGCCATCTGGCTCTAAGAACGCAGGCGCTAAGAAAAGAAAACTTGATGATGCTTGA

Translation (648 aa):
MASVSALTEELESVASELHAIDIQIQELTERRQELLQRKSVLTGKIKQYLEDSSAEASSDLDTSPAAWNK
EDFPWFGKVKDVLQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPL
ISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEKAYEA
GRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQKILCVGKCLTFTAS
FNRPNLFYEVRQKPSSAEDFTEDIVKLINGRYKGQSGIIYCFSQKDSEQITISLQKLGIHAGTYHANMEP
EDKTKVHTQWSANELQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGF
GDIFRISSMVVMENVGQQKLYEMVSYCQNVSKCRRVLIAQHFDEVWNADACNKMCDNCCKDVSFEKKNVT
QHCRDLIKILKQAEGLNEKLTPLKLIDAWMGKGAAKLRVAGVVAPALPREDLERIVAHALLQQYLKEDYS
FTAYATISYLKVGPRACLLSNEAHAVTMQVKKSAQSSVRGALSEARQVEQVDSKGEEQSSGNSQKSKSRL
QPSGSKNAGAKKRKLDDA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH