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Report for CCDS3977.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3977.1 Public Homo sapiens 5 DEPDC1B 24 110 108 CCDS HistoryNCBI Gene:55789Re-query CCDS DB by CCDS ID:3977.1Re-query CCDS DB by GeneID:55789See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3977.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265036.10 ENSP00000265036.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265036.10Link to Ensembl Protein Viewer:ENSP00000265036.5Re-query CCDS DB by Nucleotide ID:ENST00000265036Re-query CCDS DB by Protein ID:ENSP00000265036
Original member Current member NCBI NM_018369.3 NP_060839.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018369.3Link to Protein Sequence:NP_060839.2Re-query CCDS DB by Nucleotide ID:NM_018369Re-query CCDS DB by Protein ID:NP_060839Link to BLAST:NP_060839.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060839.2 529 Q8WUY9-1 529 100% 0 0

Chromosomal Locations for CCDS 3977.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 60597753 60597914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60599075 60599260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60603391 60603567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60605690 60605856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60638750 60638890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60642812 60642859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60644745 60644875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60645492 60645619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60647398 60647533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60686962 60687227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 60700046 60700093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGAGCATCGCATCGTGGGGCCCGGGCCGTACCGAGCTACCAGGCTGTGGAATGAGACCGTGGAGCTTT
TTCGTGCTAAGATGCCGTTACGGAAACATCGCTGTCGTTTCAAGAGCTATGAGCATTGTTTCACAGCGGC
CGAAGCTGTGGATTGGCTGCATGAGCTGCTGAGGTGCAGTCAAAACTTCGGCCCTGAAGTGACCCGCAAA
CAAACGGTCCAGCTGCTAAAAAAATTCCTGAAGAATCACGTTATTGAAGACATCAAGGGAAAATGGGGTG
AGGAAGATTTTGAAGACAATCGTCACTTATACAGATTTCCTCCTTCTTCACCCCTGAAACCATATCCAAA
GAAGCCCCCAAACCAAAAGGATGTTATTAAATTTCCAGAATGGAATGATCTCCCACCAGGCACTTCACAA
GAGAACATCCCAGTGAGGCCAGTTGTGATGAATTCTGAGATGTGGTACAAGCGTCACAGTATTGCAATTG
GAGAGGTGCCAGCTTGCCGTCTTGTCCACCGCAGACAGCTGACAGAGGCCAATGTAGAAGAGATATGGAA
GTCTATGACATTATCATACTTACAGAAAATTCTTGGCCTGGATTCCTTAGAAGAAGTTTTAGACGTCAAA
CTTGTCAATTCGAAGTTCATCATCCATAATGTATATAGTGTTAGCAAGCAGGGAGTTGTTATTCTTGATG
ACAAGTCAAAAGAACTTCCTCATTGGGTGCTGTCAGCTATGAAGTGTTTGGCAAATTGGCCCAACTGTTC
TGATTTGAAGCAGCCTATGTACTTGGGATTTGAAAAAGATGTCTTTAAAACCATAGCTGATTACTATGGT
CACTTGAAAGAGCCTCTACTTACATTTCATCTTTTTGATGCTTTTGTCAGTGTACTGGGTTTGTTACAGA
AGGAGAAAGTGGCAGTTGAAGCATTTCAGATTTGCTGCCTTCTCCTACCTCCTGAAAATAGGAGAAAGTT
ACAGCTATTGATGAGGATGATGGCAAGGATTTGCTTAAACAAAGAGATGCCACCCCTGTGTGATGGCTTT
GGTACCCGAACACTGATGGTTCAGACATTTTCCCGTTGCATCTTGTGTTCCAAGGATGAAGTGGACTTGG
ATGAGTTATTAGCTGCTAGATTGGTAACGTTTCTGATGGACAATTACCAGGAAATTCTGAAAGTCCCTTT
GGCCTTGCAGACCTCTATAGAGGAGCGTGTGGCTCATCTACGAAGAGTCCAGATAAAATACCCAGGAGCT
GATATGGATATCACTTTATCTGCTCCATCATTTTGCCGTCAAATTAGTCCAGAGGAATTTGAATATCAAA
GATCATATGGCTCTCAGGAACCTCTGGCAGCCTTGTTGGAGGAAGTCATAACAGATGCCAAACTCTCCAA
CAAAGAGAAAAAGAAGAAACTGAAGCAGTTTCAGAAATCCTATCCTGAAGTCTATCAAGAACGATTTCCT
ACACCAGAAAGTGCAGCACTTCTGTTTCCTGAAAAACCCAAACCGAAACCACAGCTGCTAATGTGGGCAC
TAAAGAAGCCTTTCCAACCATTTCAAAGAACTAGAAGTTTTCGAATGTAA

Translation (529 aa):
MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRK
QTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQ
ENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVK
LVNSKFIIHNVYSVSKQGVVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYG
HLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGF
GTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGA
DMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITDAKLSNKEKKKKLKQFQKSYPEVYQERFP
TPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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