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Report for CCDS39860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39860.1 Public Mus musculus 7 Gmfg 23 108 98 CCDS HistoryNCBI Gene:63986Re-query CCDS DB by CCDS ID:39860.1Re-query CCDS DB by GeneID:63986See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078845.12 ENSMUSP00000077889.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078845.12Link to Ensembl Protein Viewer:ENSMUSP00000077889.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078845Re-query CCDS DB by Protein ID:ENSMUSP00000077889
Original member NCBI NM_001039192.1 NP_001034281.1 Updated not alive Link to Nucleotide Sequence:NM_001039192.1Link to Protein Sequence:NP_001034281.1Re-query CCDS DB by Nucleotide ID:NM_001039192Re-query CCDS DB by Protein ID:NP_001034281
Current member NCBI NM_001039192.2 NP_001034281.1 Accepted alive Link to Nucleotide Sequence:NM_001039192.2Link to Protein Sequence:NP_001034281.1Re-query CCDS DB by Nucleotide ID:NM_001039192Re-query CCDS DB by Protein ID:NP_001034281Link to BLAST:NP_001034281.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034281.1 142 Q9ERL7 142 100% 0 0

Chromosomal Locations for CCDS 39860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28441039 28441041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28441434 28441530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28441669 28441718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28443220 28443269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28444853 28444935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28445917 28445990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28446372 28446443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGTCGGACTCCCTGGTGGTGTGTGAAGTGGACCCGGAGCTAAAGGAAACATTGAGGAAATTTCGTTTCC
GAAAAGAGACCAACAATGCCGCCATCATAATGAAAGTGGACAAAGACCGGCAGATGGTGGTGCTGGAGGA
TGAACTCCAGAACATCTCCCCAGAAGAACTTAAGTTGGAATTGCCAGAGAGACAGCCCAGGTTTGTGGTC
TACAGCTACAAGTACGTGCATGATGACGGCAGGGTGTCCTATCCTTTGTGCTTCATCTTCTCCAGCCCCG
TGGGCTGCAAGCCTGAACAACAGATGATGTACGCAGGAAGTAAAAACAGGCTGGTGCAGACGGCGGAGCT
TACCAAGGTGTTTGAAATCCGCACCACAGACGACCTCACCGAGACCTGGCTTAAGGAAAAGTTAGCTTTC
TTTCGTTGA

Translation (142 aa):
MSDSLVVCEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQNISPEELKLELPERQPRFVV
YSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTETWLKEKLAF
FR


Links Key
 Links to:   History report
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  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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