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Report for CCDS39873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39873.1 Public Mus musculus 7 Zfp940 23 108 98 CCDS HistoryNCBI Gene:233057Re-query CCDS DB by CCDS ID:39873.1Re-query CCDS DB by GeneID:233057See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085792.4 ENSMUSP00000082947.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085792.4Link to Ensembl Protein Viewer:ENSMUSP00000082947.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000085792Re-query CCDS DB by Protein ID:ENSMUSP00000082947
Original member NCBI NM_173738.2 NP_776099.1 Updated not alive Link to Nucleotide Sequence:NM_173738.2Link to Protein Sequence:NP_776099.1Re-query CCDS DB by Nucleotide ID:NM_173738Re-query CCDS DB by Protein ID:NP_776099
Current member NCBI NM_173738.3 NP_776099.1 Accepted alive Link to Nucleotide Sequence:NM_173738.3Link to Protein Sequence:NP_776099.1Re-query CCDS DB by Nucleotide ID:NM_173738Re-query CCDS DB by Protein ID:NP_776099Link to BLAST:NP_776099.1

Chromosomal Locations for CCDS 39873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29844780 29846248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29846469 29846564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29846834 29846960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29850942 29850950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGGCCCAAAGACTGATGACGTTCAGAGACGTGGCCGTAGACTTCTCTCCAGAGGAGTGGGAGTGTCTGA
GCCTGGACCAGAGGAGTTTATACAGAGATGTGATGCTGGAGAGCTACAGCCACCTCGTCTCAGTGGGACT
TTTTGTTTATCGGCCACATCTGTTCTCCTTGTTGGAAAAAGGACAAGACCCCTGGATGATTTTGAGGGAT
GAGACAAGGGGACCTTATCCAGACATAGATTTCAGTTCTCAGAACAAGAAGTTCCTGGGAAAACCTAGCA
CATATGAAGAATTATCTCAAAGGGAAATGAAGGAATATTTTAGAAAACGCAGTCTTGAAGATTTCTGTTT
TGGAGATGGCTGGGATGGCAAAAATCAGTTTCAAACGCATCAAAATCAGGAATATTTTAAGCAACTGGCA
GTCGCCTATGAAAAAGTGCTCACTGTGAACCAGGGTATAGTTTTCAACAACCACCAGAGACTGAATGCAG
GAGAGAAAGCAACTGAAATTCAGTGTGAAAAAGCCCTTACTGTGGAATCTGACCGTATTCTTCCTCAGCT
AACTCCCCCTGGTAACAAAGTCCACAAAGACAAGGAGTGTGGGGACACCTCTGCTCCTGAATCGGAGCGC
ACACACTGTCAGAGAGCTCACTGTCCCCAGACCCCTCAGCAGGGGAAGGAATCTGGAGGGCCGTTTGGTT
TGCCTTCAGGAATACTGGGCCTTCCGCAAGGTCACACTGGTGAGAAGTCCTATGACTGTAAGGAGTGCGG
AAAGTCCTTTACTTTGAAGTCAAACTTGACGCGACATCGCAGAATTCACACCGGTGAGAGGCCGTACACG
TGTCATGGATGTGGAAAGGCGTTTACACAGAAATCCCATCTCATGTCACATCAGAAAATTCACACTGGAA
AAAAAGCTTATGTCTGTGGGGTCTGTGGAAAAGCTTTTCACTGTGACTCAAGCCTGACCAGTCATCAGAA
TATTCATTACCATGCAGCTGATGCTGGCAAGAAAGCATATGAATGTAAAAAGTGTGGCAAAGATTTCGAT
TGTCACTCAGGTCTCATTGATCACCAGAAAGTCCACACTGGAGAGAAACCTTTTAAATGTAAGCATTGTG
GAAGGCTTTTTAGGTTTCATTCACATCTTAGGGCGCACACACGGATTCACTCTGGCGTGAAGTCCTATGA
CTGTAAGGAATGTGGAAAATCCTTTAATTTGAGGTCAAACTTGATGCGACATCACAGAGTTCACACAGGT
GAGAGGCCGTACACGTGTCATGGATGTGGAAAGGCGTTTTCACAGAAATCCCATCTCACGTCACATCAGA
AAATTCACACCGGAGAAAAAGCTTATGTCTGTGGAGTCTGTGGAAAAGCTTTTAGTCGCGGCTCAAGCCT
GACCAGTCATCAGAATATTCATTACTATGTGGTTAATGCTGGCAAGAAAGTGTATGAGTGTAAAGAATGT
GGCAAGGCTTTTGGTTGTCATTCAAATCTTAGTCGCCATCAGAAAATCCATGCTGGAGAGAAACCGTTTA
AATGTAGGGACTGTGAAAAGGCCTTTGGTCAAAGAGCACATCTTACCAAACATCAGAGAATTCACACTGG
TGAAGAAGGCCCTGATGAATGTCAGAGCGTGGAAAAGTTTTTCCTTGAAGACCACAACTATGTCGACATC
AGAAAATCCATACTGGTGTGA

Translation (566 aa):
MAQRLMTFRDVAVDFSPEEWECLSLDQRSLYRDVMLESYSHLVSVGLFVYRPHLFSLLEKGQDPWMILRD
ETRGPYPDIDFSSQNKKFLGKPSTYEELSQREMKEYFRKRSLEDFCFGDGWDGKNQFQTHQNQEYFKQLA
VAYEKVLTVNQGIVFNNHQRLNAGEKATEIQCEKALTVESDRILPQLTPPGNKVHKDKECGDTSAPESER
THCQRAHCPQTPQQGKESGGPFGLPSGILGLPQGHTGEKSYDCKECGKSFTLKSNLTRHRRIHTGERPYT
CHGCGKAFTQKSHLMSHQKIHTGKKAYVCGVCGKAFHCDSSLTSHQNIHYHAADAGKKAYECKKCGKDFD
CHSGLIDHQKVHTGEKPFKCKHCGRLFRFHSHLRAHTRIHSGVKSYDCKECGKSFNLRSNLMRHHRVHTG
ERPYTCHGCGKAFSQKSHLTSHQKIHTGEKAYVCGVCGKAFSRGSSLTSHQNIHYYVVNAGKKVYECKEC
GKAFGCHSNLSRHQKIHAGEKPFKCRDCEKAFGQRAHLTKHQRIHTGEEGPDECQSVEKFFLEDHNYVDI
RKSILV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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