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Report for CCDS39880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39880.1 Public Mus musculus 7 Clip3 23 108 98 CCDS HistoryNCBI Gene:76686Re-query CCDS DB by CCDS ID:39880.1Re-query CCDS DB by GeneID:76686See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014065.15 ENSMUSP00000014065.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014065.15Link to Ensembl Protein Viewer:ENSMUSP00000014065.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014065Re-query CCDS DB by Protein ID:ENSMUSP00000014065
Original member Current member NCBI NM_001081114.2 NP_001074583.1 Accepted alive Link to Nucleotide Sequence:NM_001081114.2Link to Protein Sequence:NP_001074583.1Re-query CCDS DB by Nucleotide ID:NM_001081114Re-query CCDS DB by Protein ID:NP_001074583Link to BLAST:NP_001074583.1
Original member Current member NCBI NM_001360763.1 NP_001347692.1 Accepted alive Link to Nucleotide Sequence:NM_001360763.1Link to Protein Sequence:NP_001347692.1Re-query CCDS DB by Nucleotide ID:NM_001360763Re-query CCDS DB by Protein ID:NP_001347692Link to BLAST:NP_001347692.1
Original member Current member NCBI NM_001360764.1 NP_001347693.1 Accepted alive Link to Nucleotide Sequence:NM_001360764.1Link to Protein Sequence:NP_001347693.1Re-query CCDS DB by Nucleotide ID:NM_001360764Re-query CCDS DB by Protein ID:NP_001347693Link to BLAST:NP_001347693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074583.1 547 B9EHT4 547 100% 0 0
NP_001347692.1 547 B9EHT4 547 100% 0 0
NP_001347693.1 547 B9EHT4 547 100% 0 0

Chromosomal Locations for CCDS 39880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30292201 30292366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30296848 30296987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30297073 30297166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30297355 30297516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30297920 30298038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30298812 30299048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30301846 30301981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30302136 30302264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30303370 30303513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30303608 30303731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30303912 30303976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30305759 30305831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30306806 30306860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGACTAAGACGGATCCTGCCCCAATGGCCCCTCCGCCCCGAGGGGAGGAGGAAGAGGAGGAGGAAGAAG
ACGAACCAGTTCCAGAAGCCCCCAGCCCCACCCAGGAGCGCCGGCAGAAGCCAGTTGTGCACCCCTCAGC
ACCTGCTCCGCTCCCCAAAGACTACGCTTTTACCTTCTTCGATCCCAATGACCCTGCGTGCCAGGAAATT
CTGTTTGACCCGAAGACCACCATCCCAGAGCTGTTCGCCATTGTACGCCAGTGGGTCCCCCAAGTCCAGC
ACAAGATTGATGTCATTGGCAACGAGATTCTTCGTCGTGGCTGCCACGTGAATGATCGTGATGGGCTCAC
AGATATGACACTGCTCCATTATGCGTGCAAAGCTGGGGCTCATGGAGTTGGAGACCCTGCGGCCGCTGTG
CGTCTCTCACAGCAGCTGCTGGCGCTAGGCGCAGATGTGACCCTGCGCAGCCGCTGGACCAACATGAACG
CCCTTCACTATGCCGCCTATTTTGATGTGCCAGACCTTGTTCGCGTGCTGCTGAAGGGGGCGAGGCCCAG
GGTGGTGAACTCCACCTGCAGTGACTTCAACCATGGCTCGGCTCTGCACATCGCTGCCTCGAATCTGTGC
CTGGGCGCTGCCAAATGTTTACTGGAGCATGGTGCCAACCCAGCACTGAGGAACCGAAAGGGACAGGTGC
CAGCGGAAGTGGTCCCAGACCCCATGGACATGTCCCTTGACAAGGCAGAGGCGGCCCTGGTGGCCAAGGA
ACTGCGGACACTCCTAGAAGAGGCTGTGCCACTGTCCTGCACCCTGCCCAAAGTTACACTCCCCAACTAT
GACAACGTCCCAGGCAATCTCATGCTCAGCGCGCTGGGCCTGCGCCTAGGAGACAGAGTGCTCCTTGATG
GGCAGAAGACGGGCACGCTGAGGTTCTGTGGGACCACTGAGTTCGCCAGCGGCCAGTGGGTGGGCGTGGA
GCTAGATGAACCAGAAGGCAAGAACGATGGCAGCGTTGGGGGTGTCCGGTACTTCATCTGCCCTCCCAAG
CAAGGTCTCTTTGCCTCTGTGTCCAAAGTCTCCAAGGCAGTGGATGCACCCCCCTCATCTGTTACCTCCA
CGCCCCGGACTCCCCGGATGGACTTCTCCCGTGTAACTGGCAAGGGCCGAAGAGAACACAAAGGGAAGAA
GAAGTCCCCATCTTCCCCATCTCTGGGCAGTCTGCAGCAGCGTGAAGGGGCCAAAGCTGAAGTTGGAGAC
CAAGTCCTTGTGGCAGGCCAGAAGCAGGGGATTGTGCGCTTCTATGGGAAGACTGACTTTGCTCCAGGTT
ACTGGTATGGCATCGAGCTGGACCAGCCCACAGGCAAACATGACGGCTCTGTGTTCGGCGTCCGGTACTT
TACCTGTGCCCCGAGGCATGGGGTCTTTGCACCAGCATCTCGTATCCAGAGGATTGGTGGATCCACTGAT
CCCCCCGGAGACAGTGTTGGAGCCAAAAAAGTGCATCAAGTGACAATGACACAGCCCAAACGCACCTTTA
CGACAGTCCGGACCCCAAAGGACATTGCGTCAGAGAACTCTATCTCCAGGTTACTCTTCTGCTGCTGGTT
TCCTTGGATGCTGAGGGCAGAGATGCAGTCTTAG

Translation (547 aa):
MTKTDPAPMAPPPRGEEEEEEEEDEPVPEAPSPTQERRQKPVVHPSAPAPLPKDYAFTFFDPNDPACQEI
LFDPKTTIPELFAIVRQWVPQVQHKIDVIGNEILRRGCHVNDRDGLTDMTLLHYACKAGAHGVGDPAAAV
RLSQQLLALGADVTLRSRWTNMNALHYAAYFDVPDLVRVLLKGARPRVVNSTCSDFNHGSALHIAASNLC
LGAAKCLLEHGANPALRNRKGQVPAEVVPDPMDMSLDKAEAALVAKELRTLLEEAVPLSCTLPKVTLPNY
DNVPGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPK
QGLFASVSKVSKAVDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKSPSSPSLGSLQQREGAKAEVGD
QVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPASRIQRIGGSTD
PPGDSVGAKKVHQVTMTQPKRTFTTVRTPKDIASENSISRLLFCCWFPWMLRAEMQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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