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Report for CCDS39935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39935.1 Public Mus musculus 7 Klk11 23 108 98 CCDS HistoryNCBI Gene:56538Re-query CCDS DB by CCDS ID:39935.1Re-query CCDS DB by GeneID:56538See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 39935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171458.1 ENSMUSP00000132721.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171458.1Link to Ensembl Protein Viewer:ENSMUSP00000132721.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171458Re-query CCDS DB by Protein ID:ENSMUSP00000132721
Original member Current member NCBI NM_019974.2 NP_064358.1 Accepted alive Link to Nucleotide Sequence:NM_019974.2Link to Protein Sequence:NP_064358.1Re-query CCDS DB by Nucleotide ID:NM_019974Re-query CCDS DB by Protein ID:NP_064358Link to BLAST:NP_064358.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064358.1 249 Q9QYN3-2 249 100% 0 0

Chromosomal Locations for CCDS 39935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43776518 43776554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43776881 43777037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43777488 43777753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43778330 43778466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43778785 43778937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGATTCTCCGACTCATTGCACTTGCTCTGGTAACAGGGCACGTAGGGGGAGAGACGAGGATCATCAAGG
GTTATGAGTGCAGGCCTCACTCACAGCCATGGCAGGTGGCCCTCTTTCAGAAGACACGGCTTCTCTGTGG
GGCAACCCTCATCGCCCCCAAATGGCTCCTGACAGCAGCCCACTGCCGCAAGCCCCATTACGTGATCCTC
CTTGGAGAGCACAATCTAGAGAAGACAGACGGCTGTGAGCAGAGGCGGATGGCCACTGAGTCCTTCCCCC
ACCCCGACTTCAACAACAGCCTCCCCAACAAAGACCACCGGAATGACATAATGCTTGTGAAGATGTCGTC
TCCCGTCTTCTTTACCCGAGCTGTGCAGCCACTCACCCTGTCCCCACACTGTGTCGCTGCAGGCACCAGC
TGCCTCATTTCTGGATGGGGCACCACGTCCAGCCCCCAGTTGCGCCTGCCTCATTCCTTGCGATGTGCCA
ATGTCTCCATCATCGAACACAAGGAGTGTGAGAAGGCCTACCCGGGCAACATCACAGACACCATGCTGTG
CGCCAGTGTTCGGAAAGAGGGCAAGGACTCCTGTCAGGGTGACTCTGGAGGCCCCCTGGTCTGCAACGGA
TCTCTTCAAGGCATCATCTCCTGGGGTCAGGACCCATGTGCCGTCACCAGAAAGCCTGGTGTCTATACAA
AAGTCTGCAAATACTTTAACTGGATCCACGAGGTTATGAGGAACAATTAG

Translation (249 aa):
MILRLIALALVTGHVGGETRIIKGYECRPHSQPWQVALFQKTRLLCGATLIAPKWLLTAAHCRKPHYVIL
LGEHNLEKTDGCEQRRMATESFPHPDFNNSLPNKDHRNDIMLVKMSSPVFFTRAVQPLTLSPHCVAAGTS
CLISGWGTTSSPQLRLPHSLRCANVSIIEHKECEKAYPGNITDTMLCASVRKEGKDSCQGDSGGPLVCNG
SLQGIISWGQDPCAVTRKPGVYTKVCKYFNWIHEVMRNN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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