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Report for CCDS39948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39948.1 Public Mus musculus 7 Flt3l 23 108 98 CCDS HistoryNCBI Gene:14256Re-query CCDS DB by CCDS ID:39948.1Re-query CCDS DB by GeneID:14256See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39948.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000146760.6 ENSMUSP00000123506.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146760.6Link to Ensembl Protein Viewer:ENSMUSP00000123506.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146760Re-query CCDS DB by Protein ID:ENSMUSP00000123506
Original member Current member EBI ENSMUST00000209238.1 ENSMUSP00000148156.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209238.1Link to Ensembl Protein Viewer:ENSMUSP00000148156.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209238Re-query CCDS DB by Protein ID:ENSMUSP00000148156
Original member NCBI NM_013520.3 NP_038548.3 Updated not alive Link to Nucleotide Sequence:NM_013520.3Link to Protein Sequence:NP_038548.3Re-query CCDS DB by Nucleotide ID:NM_013520Re-query CCDS DB by Protein ID:NP_038548
Current member NCBI NM_013520.4 NP_038548.3 Accepted alive Link to Nucleotide Sequence:NM_013520.4Link to Protein Sequence:NP_038548.3Re-query CCDS DB by Nucleotide ID:NM_013520Re-query CCDS DB by Protein ID:NP_038548Link to BLAST:NP_038548.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038548.3 232 P49772-1 232 100% 0 0

Chromosomal Locations for CCDS 39948.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45132114 45132137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45132228 45132412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45133882 45134026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45134373 45134516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45135122 45135175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45135664 45135777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45136018 45136050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGACAGTGCTGGCGCCAGCCTGGAGCCCAAATTCCTCCCTGTTGCTGCTGTTGCTGCTGCTGAGTCCTT
GCCTGCGGGGGACACCTGACTGTTACTTCAGCCACAGTCCCATCTCCTCCAACTTCAAAGTGAAGTTTAG
AGAGTTGACTGACCACCTGCTTAAAGATTACCCAGTCACTGTGGCCGTCAATCTTCAGGACGAGAAGCAC
TGCAAGGCCTTGTGGAGCCTCTTCCTAGCCCAGCGCTGGATAGAGCAACTGAAGACTGTGGCAGGGTCTA
AGATGCAAACGCTTCTGGAGGACGTCAACACCGAGATACATTTTGTCACCTCATGTACCTTCCAGCCCCT
ACCAGAATGTCTGCGATTCGTCCAGACCAACATCTCCCACCTCCTGAAGGACACCTGCACACAGCTGCTT
GCTCTGAAGCCCTGTATCGGGAAGGCCTGCCAGAATTTCTCTCGGTGCCTGGAGGTGCAGTGCCAGCCGG
ACTCCTCCACCCTGCTGCCCCCAAGGAGTCCCATAGCCCTAGAAGCCACGGAGCTCCCAGAGCCTCGGCC
CAGGCAGCTGTTGCTCCTGCTGCTGCTGCTGCTGCCTCTCACACTGGTGCTGCTGGCAGCCGCCTGGGGC
CTTCGCTGGCAAAGGGCAAGAAGGAGGGGGGAGCTCCACCCTGGGGTGCCCCTCCCCTCCCATCCCTAG

Translation (232 aa):
MTVLAPAWSPNSSLLLLLLLLSPCLRGTPDCYFSHSPISSNFKVKFRELTDHLLKDYPVTVAVNLQDEKH
CKALWSLFLAQRWIEQLKTVAGSKMQTLLEDVNTEIHFVTSCTFQPLPECLRFVQTNISHLLKDTCTQLL
ALKPCIGKACQNFSRCLEVQCQPDSSTLLPPRSPIALEATELPEPRPRQLLLLLLLLLPLTLVLLAAAWG
LRWQRARRRGELHPGVPLPSHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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