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Report for CCDS39957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39957.1 Public Mus musculus 7 Ntn5 23 108 98 CCDS HistoryNCBI Gene:243967Re-query CCDS DB by CCDS ID:39957.1Re-query CCDS DB by GeneID:243967See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107742.10 ENSMUSP00000103371.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107742.10Link to Ensembl Protein Viewer:ENSMUSP00000103371.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107742Re-query CCDS DB by Protein ID:ENSMUSP00000103371
Original member NCBI NM_001033356.3 NP_001028528.2 Updated not alive Link to Nucleotide Sequence:NM_001033356.3Link to Protein Sequence:NP_001028528.2Re-query CCDS DB by Nucleotide ID:NM_001033356Re-query CCDS DB by Protein ID:NP_001028528
Current member NCBI NM_001033356.4 NP_001028528.2 Accepted alive Link to Nucleotide Sequence:NM_001033356.4Link to Protein Sequence:NP_001028528.2Re-query CCDS DB by Nucleotide ID:NM_001033356Re-query CCDS DB by Protein ID:NP_001028528Link to BLAST:NP_001028528.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028528.2 452 Q3UQ22 452 100% 0 0

Chromosomal Locations for CCDS 39957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45684465 45684498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45686181 45686825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45691412 45691561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45691884 45691937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45692341 45692421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45693996 45694390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1359 nt):
ATGACCGACTACAGGACACTCTTTTCTTCTCCAGGTGCCGGCTCTACTGTGACCACGCCCATTACCCTCA
GCCTCTTGCTCCTCCTTAGCCAGGCCACCTCAGACCCATGCTATGATCCAGGAGGGCGCCCTCGCTTTTG
CCTCCCACCAGTGACCCAGTTGGTTGGCAAGGCAGCAGCCCCCTGCTCTCAGACCTGTGCTCTTCCTGCA
GCCAGCCCTGGCCCTGCCTGCAACAGTAGTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACATCTG
TGACCCTGCGTTTCTGCACAGCGGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCACTGGGGGGCC
CTGGAGGCCACTATGGCGTAGGCCTGCCTGGCCTGGGGCTCTGGGGGGCCCCAAGAAGGTAACCTTTCAC
TCCCCCCCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGTTCGGGGGAAAAGCAGGGC
TGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCACGGCCACGCTGCCCGCTGTGCCACTCGGGCCCA
GCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGA
GACTGGCCCTGGCGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGCCCTGCCAGTGCCACCCAATTG
GAGCAACGGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACAGGCCTGAC
ATGCAATCGCTGTGGTCCTGGCTACCAGCAGAGCCGCTCACCCAGGATGCCCTGCCAACGAATTCCAGAG
GCAACAACTACCCCTGCTACTACCCCTGTTGCATCTCGATCAGACCCACAGTGTCAAGGCTATTGCAATG
TCTCCGTCAGCAGTGTGCACATGAGCCTTCAGAGATACTGTCAGCAGGATTATGTTCTGCACGCCCAGGT
TTCAGCGTCGTCGTCGCAGCCGTCTGAGGCGGTGGGCCCCGAGTGGTGGCGGCTGGCCGTGCACGTGCTG
GCTGTGTTCAAACAGCGTGCGTGGCCCGTGCGCCGCGGTGGCCAGGAGGCCTGGGTGCCACGTGCTGACC
TAATCTGCGGCTGCCTGCGCCTGCGCCCTGGCGCTGACTACCTCCTGCTGGGCCGTGCTGCGCAGACCCA
CGACGACGACAACTATGACCCTGCGCGCCTCATCCTGAACCGCCACGGCCTCGCGCTGCCCTGGAGACCA
CGATGGGCCCGGCCGCTGCGGCGACTGCAGCAGAAGGAGCGCGGAGGTGCCTGCCGAGGCCTGCTGCCAC
CCACACGGAGCCCTGGGCCCAGGAACTAA

Translation (452 aa):
MTDYRTLFSSPGAGSTVTTPITLSLLLLLSQATSDPCYDPGGRPRFCLPPVTQLVGKAAAPCSQTCALPA
ASPGPACNSSLTLDLDGSFLLTSVTLRFCTAGPPALVLSAAWATGGPWRPLWRRPAWPGALGGPKKVTFH
SPPGPKTRIVASYLRVEFGGKAGLVTTGVRGRCQCHGHAARCATRAQPPRCRCRHHTTGPGCESCRPSHR
DWPWRPATPQHPHPCLPCQCHPIGATGGMCNQTSGQCSCKLGVTGLTCNRCGPGYQQSRSPRMPCQRIPE
ATTTPATTPVASRSDPQCQGYCNVSVSSVHMSLQRYCQQDYVLHAQVSASSSQPSEAVGPEWWRLAVHVL
AVFKQRAWPVRRGGQEAWVPRADLICGCLRLRPGADYLLLGRAAQTHDDDNYDPARLILNRHGLALPWRP
RWARPLRRLQQKERGGACRGLLPPTRSPGPRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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