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Report for CCDS4.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4.1 Public Homo sapiens 1 PLEKHN1 24 110 108 CCDS HistoryNCBI Gene:84069Re-query CCDS DB by CCDS ID:4.1Re-query CCDS DB by GeneID:84069See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379410.8 ENSP00000368720.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379410.8Link to Ensembl Protein Viewer:ENSP00000368720.3Re-query CCDS DB by Nucleotide ID:ENST00000379410Re-query CCDS DB by Protein ID:ENSP00000368720
Original member Current member NCBI NM_032129.3 NP_115505.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032129.3Link to Protein Sequence:NP_115505.2Re-query CCDS DB by Nucleotide ID:NM_032129Re-query CCDS DB by Protein ID:NP_115505Link to BLAST:NP_115505.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115505.2 611 Q494U1-1 611 100% 0 0

Chromosomal Locations for CCDS 4.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 966532 966614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 966704 966803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970277 970423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970521 970601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970686 970758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 970879 971006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 971113 971208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 971324 971404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972075 972150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972288 972424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 972861 973010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973186 973326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973500 973640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 973833 974051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 974316 974364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 974442 974575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGGGAACAGCCACTGTGTCCCTCAGGCCCCCAGGAGGCTCCGGGCCTCCTTCTCCAGAAAGCCCTCGC
TGAAGGGAAACAGAGAGGACAGCGCGCGGATGTCGGCCGGCCTGCCGGGCCCCGAGGCTGCTCGAAGCGG
GGACGCCGCCGCCAACAAGCTCTTCCACTACATCCCGGGCACGGACATCCTGGACCTGGAGAACCAGCGA
GAAAACCTGGAGCAGCCATTCCTGAGTGTGTTCAAGAAGGGGCGGCGGAGGGTGCCTGTGAGGAACCTGG
GAAAAGTTGTGCATTACGCCAAGGTCCAGCTGCGGTTCCAGCACAGCCAGGATGTCAGCGACTGCTACCT
GGAGCTATTCCCCGCCCACCTGTACTTCCAGGCCCACGGCTCGGAAGGACTCACATTTCAGGGGCTGTTA
CCGCTGACGGAGCTGAGTGTCTGCCCGCTCGAGGGGTCCCGAGAGCACGCCTTCCAGATCACAGGCCCAC
TGCCCGCACCCCTCCTGGTGCTCTGCCCCAGCCGGGCCGAGCTGGACCGCTGGCTTTACCACCTGGAGAA
GCAGACGGCCCTCCTCGGGGGGCCGCGGCGCTGCCACTCGGCACCCCCACAGCGCCGTCTAACCCGGCTG
CGGACGGCGTCAGGGCACGAACCCGGCGGCAGTGCTGTCTGTGCCTCGAGGGTCAAGCTGCAGCACCTGC
CCGCACAGGAGCAGTGGGACCGGCTCTTGGTCCTGTACCCAACGTCCTTGGCCATTTTCTCCGAGGAGCT
GGACGGGCTTTGCTTCAAGGGGGAGCTCCCACTCCGTGCCGTCCACATCAACCTGGAGGAGAAGGAGAAG
CAGATCCGCTCCTTCCTGATTGAAGGCCCCCTCATCAACACCATCCGCGTGGTGTGCGCCAGCTACGAGG
ACTACGGTCACTGGCTGCTGTGCCTTCGCGCTGTCACCCACAGGGAGGGGGCCCCGCCGCTGCCTGGTGC
CGAGAGCTTCCCAGGGTCGCAGGTTATGGGCAGTGGCCGAGGCTCACTCTCCTCAGGCGGACAGACCAGC
TGGGACTCGGGGTGCTTGGCGCCCCCCTCCACCCGCACCAGCCACTCCCTGCCTGAGTCCTCAGTGCCAT
CCACCGTGGGCTGCTCCTCCCAGCACACACCGGACCAGGCCAACTCTGACCGTGCCAGCATTGGCCGACG
GAGGACCGAGCTGAGACGCAGTGGCAGCAGCCGGTCACCCGGGAGCAAGGCCCGGGCAGAGGGCCGCGGC
CCTGTCACCCCACTGCACCTGGACCTGACCCAGCTGCACAGGCTGAGCCTGGAGAGCAGCCCAGATGCCC
CTGACCACACTTCGGAAACATCACACTCGCCCCTCTATGCCGACCCCTACACACCACCCGCCACCTCCCA
CCGCAGGGTCACAGATGTCCGGGGCCTGGAGGAGTTCCTCAGTGCCATGCAGAGTGCACGTGGACCCACG
CCCTCGAGCCCACTCCCCTCGGTGCCTGTGTCTGTGCCTGCCTCTGACCCTCGCTCCTGCTCCTCCGGCC
CCGCTGGCCCCTACTTGCTCTCCAAGAAGGGAGCCCTGCAGTCCAGAGCCGCTCAGAGACACCGGGGCTC
AGCCAAGGATGGGGGGCCGCAGCCCCCAGACGCCCCTCAGCTTGTCTCCTCTGCCAGGGAAGGTTCGCCC
GAACCCTGGCTGCCTCTGACAGATGGTCGGTCCCCCAGGAGGAGCCGGGACCCCGGCTACGACCACCTCT
GGGACGAGACTTTGTCTTCCTCCCACCAGAAGTGCCCCCAGCTTGGAGGGCCTGAGGCCAGTGGGGGGCT
TGTGCAGTGGATCTGA

Translation (611 aa):
MGNSHCVPQAPRRLRASFSRKPSLKGNREDSARMSAGLPGPEAARSGDAAANKLFHYIPGTDILDLENQR
ENLEQPFLSVFKKGRRRVPVRNLGKVVHYAKVQLRFQHSQDVSDCYLELFPAHLYFQAHGSEGLTFQGLL
PLTELSVCPLEGSREHAFQITGPLPAPLLVLCPSRAELDRWLYHLEKQTALLGGPRRCHSAPPQRRLTRL
RTASGHEPGGSAVCASRVKLQHLPAQEQWDRLLVLYPTSLAIFSEELDGLCFKGELPLRAVHINLEEKEK
QIRSFLIEGPLINTIRVVCASYEDYGHWLLCLRAVTHREGAPPLPGAESFPGSQVMGSGRGSLSSGGQTS
WDSGCLAPPSTRTSHSLPESSVPSTVGCSSQHTPDQANSDRASIGRRRTELRRSGSSRSPGSKARAEGRG
PVTPLHLDLTQLHRLSLESSPDAPDHTSETSHSPLYADPYTPPATSHRRVTDVRGLEEFLSAMQSARGPT
PSSPLPSVPVSVPASDPRSCSSGPAGPYLLSKKGALQSRAAQRHRGSAKDGGPQPPDAPQLVSSAREGSP
EPWLPLTDGRSPRRSRDPGYDHLWDETLSSSHQKCPQLGGPEASGGLVQWI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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