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Report for CCDS40016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40016.1 Public Mus musculus 7 Eed 23 108 98 CCDS HistoryNCBI Gene:13626Re-query CCDS DB by CCDS ID:40016.1Re-query CCDS DB by GeneID:13626See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40016.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107234.2 ENSMUSP00000102853.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107234.2Link to Ensembl Protein Viewer:ENSMUSP00000102853.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107234Re-query CCDS DB by Protein ID:ENSMUSP00000102853
Original member Current member EBI ENSMUST00000238981.1 ENSMUSP00000159149.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238981.1Link to Ensembl Protein Viewer:ENSMUSP00000159149.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238981Re-query CCDS DB by Protein ID:ENSMUSP00000159149
Original member Current member NCBI NM_021876.3 NP_068676.1 Accepted alive Link to Nucleotide Sequence:NM_021876.3Link to Protein Sequence:NP_068676.1Re-query CCDS DB by Nucleotide ID:NM_021876Re-query CCDS DB by Protein ID:NP_068676Link to BLAST:NP_068676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068676.1 441 Q921E6-1 441 100% 0 0

Chromosomal Locations for CCDS 40016.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 89954937 89955063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89955531 89955604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89956255 89956413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89962256 89962361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89964729 89964862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89967713 89967804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89969571 89969652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89970306 89970431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89971540 89971605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89972231 89972323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89976897 89977049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 89980412 89980525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGTCCGAGAGGGAAGTGTCGACTGCGCCGGCGGGAACAGACATGCCCGCGGCCAAGAAGCAGAAGTTGA
GCAGCGACGAGAACAGCAACCCGGACCTCTCGGGAGACGAAAATGACGATGCTGTCAGTATTGAGAGTGG
CACAAACACAGAACGCCCGGACACGCCCACAAATACGCCAAATGCACCAGGAAGGAAAAGCTGGGGAAAG
GGAAAATGGAAGTCAAAGAAATGCAAATATTCTTTCAAATGTGTGAACAGCCTCAAGGAAGATCATAACC
AGCCATTGTTTGGAGTTCAGTTTAACTGGCACAGTAAAGAAGGAGACCCTCTGGTGTTTGCAACTGTGGG
AAGCAACAGAGTAACCTTATACGAATGCCATTCACAGGGGGAGATACGGTTATTGCAGTCCTATGTAGAT
GCTGATGCAGATGAAAACTTTTACACTTGTGCATGGACCTATGATAGCAACACCAGCCACCCTCTATTAG
CAGTTGCTGGATCTAGAGGCATTATAAGAATAATTAATCCTATAACAATGCAGTGTATAAAGCACTATGT
TGGCCATGGAAATGCTATCAATGAGCTGAAATTCCACCCACGAGACCCAAACCTTCTCCTGTCAGTAAGT
AAAGATCATGCTTTACGGTTATGGAATATCCAAACAGACACTCTTGTGGCAATATTCGGAGGTGTGGAAG
GGCACAGAGATGAAGTTCTGAGTGCTGATTATGATCTTTTGGGTGAAAAAATAATGTCCTGTGGTATGGA
TCACTCTCTTAAACTGTGGAGAATCAACTCAAAGAGGATGATGAATGCAATTAAGGAGTCTTATGATTAT
AACCCAAACAAAACTAACAGGCCATTTATTTCCCAGAAAATCCACTTTCCTGACTTTTCTACCAGAGACA
TACATAGGAATTATGTTGATTGTGTGCGATGGTTAGGCGATTTGATACTTTCCAAGTCTTGTGAAAATGC
CATTGTATGCTGGAAACCTGGCAAAATGGAGGATGATATAGATAAAATTAAACCTAGTGAGTCTAATGTG
ACTATTCTTGGGCGATTTGATTACAGCCAGTGTGACATTTGGTACATGAGGTTTTCTATGGATTTCTGGC
AAAAGATGCTTGCATTGGGCAATCAGGTTGGCAAACTGTATGTTTGGGATTTAGAAGTAGAAGATCCTCA
TAAAGCCAAATGCACAACACTGACCCATCATAAATGTGGCGCGGCTATTCGACAAACCAGTTTCAGTAGG
GATAGCAGCATCCTCATAGCTGTCTGCGATGATGCCAGCATTTGGCGATGGGATCGACTTCGATAA

Translation (441 aa):
MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSIESGTNTERPDTPTNTPNAPGRKSWGK
GKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD
ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS
KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY
NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV
TILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR
DSSILIAVCDDASIWRWDRLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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