NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4014.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4014.2 Public Homo sapiens 5 PTCD2 24 110 108 CCDS HistoryNCBI Gene:79810Re-query CCDS DB by CCDS ID:4014.2Re-query CCDS DB by GeneID:79810See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4014.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308077.9 ENSP00000308948.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000308077.9Link to Ensembl Protein Viewer:ENSP00000308948.5Re-query CCDS DB by Nucleotide ID:ENST00000308077Re-query CCDS DB by Protein ID:ENSP00000308948
Original member Current member EBI ENST00000380639.10 ENSP00000370013.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380639.10Link to Ensembl Protein Viewer:ENSP00000370013.4Re-query CCDS DB by Nucleotide ID:ENST00000380639Re-query CCDS DB by Protein ID:ENSP00000370013
Original member Current member NCBI NM_024754.5 NP_079030.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024754.5Link to Protein Sequence:NP_079030.3Re-query CCDS DB by Nucleotide ID:NM_024754Re-query CCDS DB by Protein ID:NP_079030Link to BLAST:NP_079030.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079030.3 388 Q8WV60-1 388 100% 0 0

Chromosomal Locations for CCDS 4014.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 72320383 72320509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72322172 72322264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72326612 72326741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72331258 72331375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72335018 72335096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72335794 72335885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72338622 72338735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72342962 72343036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72352641 72352754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 72358203 72358427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGTCCGAGACAGTATGGCTGCTGCATTTCGGCCCTCGAATCGAGTTCTCCTGCAGGCGCTGCAGATTT
TGGTGTATCCTGGGGTGGGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGCTAAAAGATACCT
ACTTACAGATAATGTGGTGAAATTAAAAGAATTTCAACAAAAGAAAGTGGCTGTTGCATGTAATCTTTCT
GGCACTAAAGAAACGTATTTTAGAAACTTGAAAAAGAAACTGACCCAGAACAAGCTCATCTTGAAGGGGG
AGTTGATAACCTTACTACATTTGTGTGAGTCTCGGGACCATGTGGAACTGGCTAAAAATGTCATTTACAG
GTACCATGCAGAGAACAAAAATTTCACTTTGGGGGAGTATAAATTTGGACCGCTTTTTGTGAGGTTGTGT
TACGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCAGCATTTACGAGGTTTCTTCTCAG
ACTCCACATCATTCAATATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAGTGCTTTGCAAGT
ATTGATAGAGATGAAAAACCAAGATGTGAAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGC
TACAAACTGAATAGCCCTGAGTCTTTCAAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGAG
AAATTCTCTCCAGGAGAGCATCCTGTTTCGCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGC
TGTGTCCATTTTTTCTCAAATCATGAATCCAGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCAT
ATCCAGTCAAATATGTTGGAAAACCTGATAAAGACTCTAAAAAATGCTGCAGAAGGAAATTTATCAAAAT
TTGTGAAAAGACATGTGTTCTCGGAGGAAGTGCTGGCCAAAGTGAGGGAAAAAGTGAAGGATGTGCCTGC
CCTTGTGGCCAAATTTGATGAGATCTATGGGACACTGCACATCACTGGCCAGGTCACCACTGATTCTTTG
GATGCTGTGCTCTGCCACACCCCCAGGGACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCA
GCCGTCGCACCTTCCAGCCACTCAGCCAGTCCCTGTTGGCTGAGTAA

Translation (388 aa):
MVRDSMAAAFRPSNRVLLQALQILVYPGVGGSGSVSCRCPLGAKRYLLTDNVVKLKEFQQKKVAVACNLS
GTKETYFRNLKKKLTQNKLILKGELITLLHLCESRDHVELAKNVIYRYHAENKNFTLGEYKFGPLFVRLC
YELDLEESAVELMKDQHLRGFFSDSTSFNILMDMLFIKGKYKSALQVLIEMKNQDVKFTKDTYVLAFAIC
YKLNSPESFKICTTLREEALLKGEILSRRASCFAVALALNQNEMAKAVSIFSQIMNPESIACINLNIIIH
IQSNMLENLIKTLKNAAEGNLSKFVKRHVFSEEVLAKVREKVKDVPALVAKFDEIYGTLHITGQVTTDSL
DAVLCHTPRDRKSHTLLLNKRMVSRRTFQPLSQSLLAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH