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Report for CCDS40181.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40181.1 Public Mus musculus 7 Lmntd2 23 108 98 CCDS HistoryNCBI Gene:72000Re-query CCDS DB by CCDS ID:40181.1Re-query CCDS DB by GeneID:72000See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40181.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026573.6 ENSMUSP00000026573.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026573.6Link to Ensembl Protein Viewer:ENSMUSP00000026573.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026573Re-query CCDS DB by Protein ID:ENSMUSP00000026573
Original member Current member NCBI NM_028050.2 NP_082326.1 Accepted alive Link to Nucleotide Sequence:NM_028050.2Link to Protein Sequence:NP_082326.1Re-query CCDS DB by Nucleotide ID:NM_028050Re-query CCDS DB by Protein ID:NP_082326Link to BLAST:NP_082326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082326.1 664 Q0VET5 664 100% 0 0

Chromosomal Locations for CCDS 40181.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141210073 141210204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141210281 141210530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141210691 141210887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141210973 141211092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141211172 141211361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141211478 141211568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141211784 141212055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141212396 141212484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141212586 141212657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141212926 141213081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141213202 141213289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141213634 141213786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141213874 141214058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGGCCCCTAAGTCTTGCCAGGAGTCTGAAGATAAGCAGGTATCCCCAGCTCCAGCAGGTGTACAGCCAG
ACAGCAGTGACTTAGGGTCTCCAGTTGGCACACCTGTCGACAGAGTGGCTCCTTCCTATTCTCAGAGCGC
TAAGCTCTACACATCCACACCAATGGGCTGCTCCGTCAAGCAGCAGTTAGCCCCTGAAACCCTGGACCCA
CGTACCCTGAGGCTCTTATGGGAACAGAGAGAACTAGAGATCCAGGCACTTCGGTGGGCTGTTCAGAATG
GCCACAATGCCCGATACTCCAGCATCCTGCAAGAGGTGGCAGGGGTTCCCTCTGAGCGGAACTCCAAAAG
TCAAGACAAATTCCTGCGGAACCAGGTCCAGAAGCTAACCCTGGAGCTGAAAGCACAGAAGGAACAAGCT
CAGCAGGAGAAACAGCAGTTAGAGGAGAAACTGCAGCAGAACCTCTGGGCAAAGCAGCAGCTGGAGGCTG
AGCTTCAGACTTTTCAAAAATCATGCCTTCTGCAGCTAGCCCGTTCCTCTTGGGTGGGACGCGTGCTGAG
GTCTCAGACCGGCAGCGTCGAGGTGGTCACTACAGAGGTTCTGAGAGACCCCAGTGACTTTTCTGAGTCT
GCTGAGATTCCCACTTCTGGGGAGGGTTTCCCGTTGGAAGATGTAGATTGGAACAGCATTGCCCAGCGAT
ATCCCAACCTCTTCTCCAACTTGAATTTCTATTCGGATCAAAAGCAGTCCCAGCCCCCGACCTCCGAAAC
GTATACCTTGGACTCGGAGGGCGCCACCAAGCACACAGAGAAGCCTACCAAGATCCTGGAGTGGAGCGCC
TTGCCTTTGTTAGACACCAGTAGCTCAGAAAGGACCCAGTCTGACACCAGCAGCTGCCCGATAGCTCTGC
ATTCTGGAGCAAAGAAGACGACTGGCCACCCATCCCAGGGAACAAATTTAGCTTCTTCTGAGCAGATGCA
GGAACACACTAGGAGCTTCAGTGGATACACGGAAGATCTCTGTAAGAGCCATTCACCCTCGTGTAGCAAG
ACTGTTTTGGAGTCCTATACAGACCTTCACCACCCATATACAAGACCCCAGTTGAACCCATTCGGCTGCT
GCTTGAAGATCGCTGCTGTCAGCCACCGAGAGAAGTTCATCCGCGTCATCAACCAGTCACAGGCAGAGAC
AATTGACCTGGGTGGCTTTGTTCTGCAGCAGCTTGTGAGGGACTTCCCTGTGTGCATGTACCGCTTCCCA
CCCGGTACTCTGCTAGCCCCGCAGCACCACATCACGGTATGGGGCGAAGGAACCAGCAGGACCAAGAAGC
AGCTGCCAGTGGCCTCAGGCCAGGACCCCTTCCAATTCCAATCTAGCCGAGGCTGTGTGACAGTGCTAGT
CAACCCCCAGGGTCAGGTCCTCAGCGAGCACCAAGCCACACCCTGCGTGACTCTGGGCTCAAAGATCTTC
ACGGACAACACTGACTGGTCCATTGACTGCTTCCCGCTCTCAGAGTCTGAGCCTGATGTTCACCCTGGTG
AACAGCAGTGTCGACCTTCATCACCACAGAAGGGTCGGGCAAAGGATGCTGGGGCCAGGCGCAAGAAGCC
AGGGCCAGGTGTTCGTCAGCACAGGCACTCCAGCACAAGCGGACTGAGGGCCTCACGAACTCTTCACCCC
ACAGAGACCCGGGATATCTTGCCACTCCTAAGTTCCCGAAAGCTTCTTCCCTCTGGGGAAGTCCTTACAC
AGCAGGAAGGTGTGAAGGCTGAGACGTCAGAGCTCCTGCCCGTGATCCCAGAGTGTCCCTCCAGACTGTG
TCTTGGTGAGGACTCACTGGGTAGGCAGGAGTACAAGGTCCAGGTGTGCCGGAAAAGCGTGGACCTGAGT
TGCCCCATGGTGGCCCTGTCAGTCCAGAACACAGCCGAGAGCAGATACGGCTTCCGCTTCCTCTGCTACC
CTCCCATCACTGAGGAATTGTGTCGGCGGTTGTAG

Translation (664 aa):
MAPKSCQESEDKQVSPAPAGVQPDSSDLGSPVGTPVDRVAPSYSQSAKLYTSTPMGCSVKQQLAPETLDP
RTLRLLWEQRELEIQALRWAVQNGHNARYSSILQEVAGVPSERNSKSQDKFLRNQVQKLTLELKAQKEQA
QQEKQQLEEKLQQNLWAKQQLEAELQTFQKSCLLQLARSSWVGRVLRSQTGSVEVVTTEVLRDPSDFSES
AEIPTSGEGFPLEDVDWNSIAQRYPNLFSNLNFYSDQKQSQPPTSETYTLDSEGATKHTEKPTKILEWSA
LPLLDTSSSERTQSDTSSCPIALHSGAKKTTGHPSQGTNLASSEQMQEHTRSFSGYTEDLCKSHSPSCSK
TVLESYTDLHHPYTRPQLNPFGCCLKIAAVSHREKFIRVINQSQAETIDLGGFVLQQLVRDFPVCMYRFP
PGTLLAPQHHITVWGEGTSRTKKQLPVASGQDPFQFQSSRGCVTVLVNPQGQVLSEHQATPCVTLGSKIF
TDNTDWSIDCFPLSESEPDVHPGEQQCRPSSPQKGRAKDAGARRKKPGPGVRQHRHSSTSGLRASRTLHP
TETRDILPLLSSRKLLPSGEVLTQQEGVKAETSELLPVIPECPSRLCLGEDSLGRQEYKVQVCRKSVDLS
CPMVALSVQNTAESRYGFRFLCYPPITEELCRRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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