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Report for CCDS40414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40414.1 Public Mus musculus 8 Rad23a 23 108 98 CCDS HistoryNCBI Gene:19358Re-query CCDS DB by CCDS ID:40414.1Re-query CCDS DB by GeneID:19358See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003911.12 ENSMUSP00000003911.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003911.12Link to Ensembl Protein Viewer:ENSMUSP00000003911.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000003911Re-query CCDS DB by Protein ID:ENSMUSP00000003911
Original member NCBI NM_009010.5 NP_033036.2 Updated not alive Link to Nucleotide Sequence:NM_009010.5Link to Protein Sequence:NP_033036.2Re-query CCDS DB by Nucleotide ID:NM_009010Re-query CCDS DB by Protein ID:NP_033036
Current member NCBI NM_009010.6 NP_033036.2 Accepted alive Link to Nucleotide Sequence:NM_009010.6Link to Protein Sequence:NP_033036.2Re-query CCDS DB by Nucleotide ID:NM_009010Re-query CCDS DB by Protein ID:NP_033036Link to BLAST:NP_033036.2

Chromosomal Locations for CCDS 40414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84835561 84835674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84835755 84835919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84837460 84837590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84837689 84837767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84838007 84838134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84838273 84838328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84838469 84838650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84838794 84838955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84840494 84840565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGCCGTCACCATCACCCTTAAAACGTTGCAGCAGCAGACCTTCAAGATCCGCATGGAACCTGACGAGA
CGGTAAAGGTGCTGAAGGAGAAGATAGAAGCTGAGAAGGGTAGAGATGCTTTCCCCGTGGCTGGACAGAA
ACTCATCTATGCTGGCAAGATCTTGAGTGACGATGTTCCCATCAAGGAATACCATATAGATGAGAAGAAC
TTTGTGGTTGTCATGGTGACCAAGGCCAAAGCTGGCCAGGGTATCCCGGCACCCCCAGAGGCCTCACCCA
CTGCTGTCCCGGAGCCCTCCACACCTTTCCCTCCAGTCCTGGCATCAGGCATGTCTCATCCCCCACCTAC
CAGCAGAGAGGACAAGAGCCCATCAGAGGAGTCAACCACCACAACATCTCCAGAATCCATTTCTGGCTCT
GTTCCCTCTTCAGGTAGCAGCGGGCGAGAGGAAGACGCAGCTTCCACATTAGTGACTGGCTCTGAATATG
AGACGATGCTGACTGAGATCATGTCCATGGGCTACGAGCGGGAGCGGGTTGTGGCCGCATTGAGGGCCAG
CTACAACAACCCCCACCGAGCTGTGGAGTACTTGCTCACGGGAATTCCAGGAAGCCCTGAGCCTGAACAT
GGTTCTGTCCAGGAAAGCCAGGCGCCTGAGCAGCCGGCCACAGAAGCAGGGGAGAACCCCCTGGAGTTCC
TGCGGGACCAGCCTCAGTTCCAGAACATGCGGCAAGTGATTCAACAGAACCCAGCGCTCCTGCCTGCTCT
GCTCCAGCAGCTGGGTCAGGAAAACCCTCAGCTCCTGCAGCAAATTAGCCGTCACCAGGAGCAGTTCATC
CAGATGTTGAATGAGCCTCCCGGGGAGCTGGCGGACATCTCTGATGTAGAGGGGGAGGTTGGTGCCATAG
GTGAGGAGGCCCCACAGATGAACTATATCCAGGTGACACCGCAGGAGAAGGAGGCTATAGAAAGGCTGAA
GGCACTGGGCTTCCCAGAGAGCCTGGTGATCCAGGCCTACTTCGCGTGTGAAAAAAATGAGAATTTGGCT
GCCAACTTCCTCCTGAGTCAGAACTTTGATGATGAGTGA

Translation (362 aa):
MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIKEYHIDEKN
FVVVMVTKAKAGQGIPAPPEASPTAVPEPSTPFPPVLASGMSHPPPTSREDKSPSEESTTTTSPESISGS
VPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPEPEH
GSVQESQAPEQPATEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFI
QMLNEPPGELADISDVEGEVGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLA
ANFLLSQNFDDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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