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Report for CCDS40418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40418.1 Public Mus musculus 8 Fbxw9 23 108 98 CCDS HistoryNCBI Gene:68628Re-query CCDS DB by CCDS ID:40418.1Re-query CCDS DB by GeneID:68628See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095220.3 ENSMUSP00000092845.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095220.3Link to Ensembl Protein Viewer:ENSMUSP00000092845.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095220Re-query CCDS DB by Protein ID:ENSMUSP00000092845
Original member Current member NCBI NM_026791.2 NP_081067.2 Accepted alive Link to Nucleotide Sequence:NM_026791.2Link to Protein Sequence:NP_081067.2Re-query CCDS DB by Nucleotide ID:NM_026791Re-query CCDS DB by Protein ID:NP_081067Link to BLAST:NP_081067.2

Chromosomal Locations for CCDS 40418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85060128 85060536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85061946 85062085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85062172 85062300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85064384 85064496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85064581 85064672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85065821 85065969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85066056 85066169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85066273 85066362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85066445 85066510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85066590 85066664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1377 nt):
ATGGATCTTTCCTCAGGGCGGAGTGGGGATCCTCGCTCTTGTGAGGAGGAATCTGACCCCGAGCCAGATC
CCGACCCTGACACTCAAGCTGAGGCCTACGTAGCCCGTGTGCTTACCCCTCCCAAGCTTGGCCTGACCCC
GCGGCGCTCGTCACTGCAGTCCATGTTCTCCGCGTCCCTAGGCGTGCCGGAGCGAAAGGCCGCCTCCAAA
GTCCCGGCCGTGCGCCTACCGGGCCTCTTGAGCCTTCCCCCGGAGCTGCTGCTGGAGATCTGTGCCTACC
TGGATGCGCGAGTCGTGCTTCAAGTCCTGCCGTGCGTGTGCCAAGCGTTGCACGACCTCGTGCGTGATCG
TGTCACCTGGAGGCTACGCGCTCAGCGCCGCGTACGCGCACCCTACCCAGTGGTGGAAGAGGAGAACTTT
GACTGGCCAGCCGCCTGCATTGAGCTGGAGCAGCACCTGGCCCGCTGGGCAGAGGATGGACAGCGAACCG
AGTACTTCTGCCTGGCTGATGGCCACTTTGCTTCCATTGATGCGGTGTTGCTGCTCCAGGGTGGGGCACT
GTGTCTGTCAGGCTCCCGGGATCGGAATGTCAACCTGTGGGACCTGCGCCATCTAGGGAAGGATCCCAGC
CGAGTTCTGGTGAAGGCCTTAGGCACCCAGGGCAATAGCACACACAAGGGCTGGGTATGGTCGCTAGCAG
CGCAGGACCACCGTGTGTGCTCCGGCTCTTGGGACAGCACTGTGAAGCTGTGGGACATGGCGGCTGATGG
GCAGCAGTTTGGAGAGATCAAGGGCAAGGCGGCAGTGCTGTGCCTTTCCTACCAACCTGATATCCTGGTG
ACTGGTACCTATGACAAGAAGGTGACCATCTATGATCCCAGAGCTGGTTTGGCCCTGGTGAAGAGCCGGA
GGCTGCACTCAAGCGCGGTGCTAGCAGTGCTGGCAGATGACAGGCATGTCATCTCAGGCAGCGAGGACCA
CAGCCTTGTGGTATTTGATCGTCGAGCCAATAGCGTCCTACAGCGGCTGCAGCTGGACTCCTATCTCCTG
TGCATGTCTTACCAGGAGCCCCAGCTCTGGGCAGGTGACAACCAGGGTCTGCTGCACGTCTTCGCCAATC
GAGATGGTTGCTTCCAGCTTGTTCGGTCCTTTGATGTGGGTCACCAGTCTCAGATCACAGGGATCAAACA
CTCGCTGGGGACTTTGTACACAACATCTACTGACAAGACCATTCGGGTTCACGTGCCCACAGATCCACCT
AGGACCATCTGTACCCGAAGCCACCACAACGTGTTAAATGGGATCTGTGCTGAGGGCAACGTAGTGGTGG
CTGCCTCTGGTGGCCTGTCATTGGAGGTCTGGAGGCTGCTGGCCTGA

Translation (458 aa):
MDLSSGRSGDPRSCEEESDPEPDPDPDTQAEAYVARVLTPPKLGLTPRRSSLQSMFSASLGVPERKAASK
VPAVRLPGLLSLPPELLLEICAYLDARVVLQVLPCVCQALHDLVRDRVTWRLRAQRRVRAPYPVVEEENF
DWPAACIELEQHLARWAEDGQRTEYFCLADGHFASIDAVLLLQGGALCLSGSRDRNVNLWDLRHLGKDPS
RVLVKALGTQGNSTHKGWVWSLAAQDHRVCSGSWDSTVKLWDMAADGQQFGEIKGKAAVLCLSYQPDILV
TGTYDKKVTIYDPRAGLALVKSRRLHSSAVLAVLADDRHVISGSEDHSLVVFDRRANSVLQRLQLDSYLL
CMSYQEPQLWAGDNQGLLHVFANRDGCFQLVRSFDVGHQSQITGIKHSLGTLYTTSTDKTIRVHVPTDPP
RTICTRSHHNVLNGICAEGNVVVAASGGLSLEVWRLLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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