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Report for CCDS40428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40428.1 Public Mus musculus 8 Irx6 23 108 98 CCDS HistoryNCBI Gene:64379Re-query CCDS DB by CCDS ID:40428.1Re-query CCDS DB by GeneID:64379See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034185.12 ENSMUSP00000034185.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034185.12Link to Ensembl Protein Viewer:ENSMUSP00000034185.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034185Re-query CCDS DB by Protein ID:ENSMUSP00000034185
Original member Current member NCBI NM_022428.3 NP_071873.2 Accepted alive Link to Nucleotide Sequence:NM_022428.3Link to Protein Sequence:NP_071873.2Re-query CCDS DB by Nucleotide ID:NM_022428Re-query CCDS DB by Protein ID:NP_071873Link to BLAST:NP_071873.2

Chromosomal Locations for CCDS 40428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 92675035 92675079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92676054 92676302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92676943 92677052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92677211 92677515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92678215 92678817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92679646 92679653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGGCCTTTTCACCTTTTGGACACCCGTATGGCAGCACATCCCAGTTTCTGGTGTCTGCAAGTTCCAGTG
CCACTTGCTGCGAAACGGCCCCTCGGCCAGTGTCAGATGTGGCCTCAGCCTCCACCTCTGCCTCTACTCT
TTGCTGTACACCCTATGACAGTCGGCTGCTGGGCAGTGCTCGGCCAGAGCTGGGAGCTGCCTTGGGCATC
TATGGAGCACCCTATGCAGCTGCCCAGAGTTACCCTGGGTACCTGACCTATGGCCCAGAGCCACCCACAC
TGTGTGGCGCACTGAATCCTCAGTATGAGTTCAAGGATGCTGCAGGAAGCTTTGCCCCCAGCCTGACCCA
GCCAGGGGCCTACTACCCCTATGAAACAACTCTGGGGCAGTATCAATACGACAGGTATGGCGGAGTGGAA
TTGAGCAGTGCTGGCCGCAGGAAGAATGCCACAAGGGAGAGCACCAGCGCACTGAAGGCCTGGCTCCACG
AGCACCGCAAGAACCCGTACCCCACCAAGGGCGAGAAGATCATGCTGGCCATCATCACCAAGATGACCCT
CACCCAGGTGTCCACCTGGTTCGCCAACGCGCGCCGGCGCCTCAAGAAGGAGAACAAGATGACATGGGCG
CCCAAGAACAAGGGAGGGGAGGAGAGGAAAGCAGACAGTGGAGAAGACTCTCTGGGATGCCTGAATGGTG
ACACCAAAGATGCTACTGCCAGCCAGGAAGCCCGGGGGCTGAGGCTGAGTGACCTGGAAGACCTGGAGGA
AGAGGAGGAAGAGGAAGAAGCAGAGGAGGAGGCAGCGGTCTCAGCAGCACGCAGGCTGGCGGATTTTCAG
AAGAGCACGCAACCCCTGCCTGCTCCCTGCGCCGCCGCCCAGGAGAGATGCTTGGAGAGCAGAGAGTGCG
GCCTGGGGCTACCCCGTTTCTCTTTTACTGAGGCCCCACAATCAGGGGAAGCTGACTTCATCACAGCAGA
GCCAGGCGGCCCCACGATGATCTTACACTACCCAAGTGGCCACAAACCCCGCATTTGGTCCTTAGCTCAC
ACTGCGGCAGCCAGCGCTGTCGAAAGTGCTCCCTCAACTCCGCCCAGGGCACAAAGTCCAGAGTGCCACA
TGATTCCCAGACAGCCCAGTTCTATCAGGCGACTCCTGGTACCCAGAGACTCCGAAGGCGAAGAGGATTC
TCCTGCAGCCAAAGCTTTTGGAAACTCCACGTTCACCCTGCAGGGGCTGCCACTGAACTGTGCACCATAC
CCGAGGCGGAGAGAGCCTGAAGTGCGGTTCCAGTACCCATCTGGAGCAGAAGCAGGTTAG

Translation (439 aa):
MAFSPFGHPYGSTSQFLVSASSSATCCETAPRPVSDVASASTSASTLCCTPYDSRLLGSARPELGAALGI
YGAPYAAAQSYPGYLTYGPEPPTLCGALNPQYEFKDAAGSFAPSLTQPGAYYPYETTLGQYQYDRYGGVE
LSSAGRRKNATRESTSALKAWLHEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWA
PKNKGGEERKADSGEDSLGCLNGDTKDATASQEARGLRLSDLEDLEEEEEEEEAEEEAAVSAARRLADFQ
KSTQPLPAPCAAAQERCLESRECGLGLPRFSFTEAPQSGEADFITAEPGGPTMILHYPSGHKPRIWSLAH
TAAASAVESAPSTPPRAQSPECHMIPRQPSSIRRLLVPRDSEGEEDSPAAKAFGNSTFTLQGLPLNCAPY
PRRREPEVRFQYPSGAEAG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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