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Report for CCDS40452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40452.1 Public Mus musculus 8 Nae1 23 108 98 CCDS HistoryNCBI Gene:234664Re-query CCDS DB by CCDS ID:40452.1Re-query CCDS DB by GeneID:234664See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034349.9 ENSMUSP00000034349.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034349.9Link to Ensembl Protein Viewer:ENSMUSP00000034349.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000034349Re-query CCDS DB by Protein ID:ENSMUSP00000034349
Original member Current member NCBI NM_144931.3 NP_659180.1 Accepted alive Link to Nucleotide Sequence:NM_144931.3Link to Protein Sequence:NP_659180.1Re-query CCDS DB by Nucleotide ID:NM_144931Re-query CCDS DB by Protein ID:NP_659180Link to BLAST:NP_659180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659180.1 534 Q8VBW6 534 100% 0 0

Chromosomal Locations for CCDS 40452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104511158 104511267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104513200 104513249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104513341 104513455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104516129 104516221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104516648 104516734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104517907 104517946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104518188 104518263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104519545 104519678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104519764 104519823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104522647 104522738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104523162 104523225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104523576 104523638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104524335 104524444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104526280 104526389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104527083 104527162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104527378 104527449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104528187 104528217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104530056 104530116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104530393 104530496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104534512 104534564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGGCGCAGCCAGGGAAGATACTCAAGGAGCAAAAGTACGACCGGCAGCTGAGGCTGTGGGGTGATCATG
GACAAGAAGCTTTGGAATCTGCTCATGTTTGCTTAATAAATGCAACGGCTACAGGAACTGAAATTCTTAA
AAACTTGGTGCTGCCAGGTATTGGATCATTTACAATTATTGATGGAAATCTGGTCAGCGGAGAAGATGCT
GGAAACAACTTTTTCCTTCAAAAAAGCAGTATTGGCAAGAACCGAGCTCAAGCTGCCATGGAATTCTTAC
AAGAACTAAATAGCGATGTCTCTGGAAGTTTTGTGGAAGAGAGTCCAGAAAACCTTCTAGACAATGATCC
TTCATTTTTCTGTAGGTTTACTATTGTGGTTGCAACTCAGCTTCTTGAAAGTACATTGCTGCGTTTAGCA
GATGTTCTCTGGAATTCCCAGATCCCTCTTTTGATCTGTAGGACATATGGACTAGTTGGTTATATGAGGA
TTATTATAAAAGAACACCCAGTAATAGAATCTCATCCAGATAATGCATTGGAGGATCTACGACTAGATAA
GCCATTTCCTGAACTGAGAGAACATCTTCAGTCTTATGACTTGGACCATATGGAAAAAAAGGACCATAGC
CATACTCCATGGATTGTGATCATAGCTAAATATTTAGCACAGTGGTATAATGAAACAAATGGACGGATTC
CTAAAAGTTATAAAGAAAAAGAGGACTTCAGAGATTTGATAAGACAAGGGATTTTAAAGAATGAAAATGG
AGCTCCAGAAGACGAAGAGAATTTTGAAGAAGCCATCAAAAATGTGAACACAGCACTAAATACAACTCAG
ATCCCAAGCAGTATTGAAGATATATTTAATGATGATCGATGCATAAATATCACCAAACAGACACCAACTT
TTTGGATTCTAGCTCGTGCCTTAAAGGAATTTGTGGCCAAGGAGGGTCAAGGAAATTTACCTGTCCGAGG
CACAATTCCTGATATGATTGCAGATTCAAACAAATACATAAAACTGCAGAATGTTTACCGAGAGAAAGCA
AAGAAAGATGCTGCTGCTGTAGGCAATCACGTTGCCAAATTGCTTCAGTCTGTTGGCCAGGCACCAGAGT
CCATTTCAGAGAAAGAATTAAAATTGCTTTGCAGCAATTCTGCATTTCTTCGAGTGGTAAGATGTCGATC
TTTAGCTGAAGAGTATGGCTTGGATACAGTCAACAAAGATGAAATTATTTCTAGCATGGACAATCCGGAT
AATGAGATAGTCCTGTACCTGATGTTGCGGGCTGTTGATCGATTTCATAAACAGCATGGCAGATACCCAG
GAGTATCTAACTATCAAGTTGAAGAAGATATAGGGAAGTTGAAGTCCTGTCTTACTGGCTTCCTTCAGGA
ATATGGGCTGTCTGTAATGGTGAAAGACGATTATGTCCATGAATTTTGCCGGTACGGAGCTGCTGAGCCA
CACACCATTGCTGCGTTCCTGGGAGGAGCTGCTGCTCAAGAAGTTATCAAAATAATCACCAAACAATTCG
TAATTTTTAATAATACTTATATTTATAGTGGTATGTCACAAACTTCTGCAACTTTCCAGTTGTAG

Translation (534 aa):
MAQPGKILKEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNLVSGEDA
GNNFFLQKSSIGKNRAQAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTIVVATQLLESTLLRLA
DVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHLQSYDLDHMEKKDHS
HTPWIVIIAKYLAQWYNETNGRIPKSYKEKEDFRDLIRQGILKNENGAPEDEENFEEAIKNVNTALNTTQ
IPSSIEDIFNDDRCINITKQTPTFWILARALKEFVAKEGQGNLPVRGTIPDMIADSNKYIKLQNVYREKA
KKDAAAVGNHVAKLLQSVGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTVNKDEIISSMDNPD
NEIVLYLMLRAVDRFHKQHGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLSVMVKDDYVHEFCRYGAAEP
HTIAAFLGGAAAQEVIKIITKQFVIFNNTYIYSGMSQTSATFQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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