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Report for CCDS40554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40554.1 Public Mus musculus 9 Spc24 23 108 98 CCDS HistoryNCBI Gene:67629Re-query CCDS DB by CCDS ID:40554.1Re-query CCDS DB by GeneID:67629See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098942.5 ENSMUSP00000096541.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098942.5Link to Ensembl Protein Viewer:ENSMUSP00000096541.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098942Re-query CCDS DB by Protein ID:ENSMUSP00000096541
Original member Current member NCBI NM_026282.6 NP_080558.1 Accepted alive Link to Nucleotide Sequence:NM_026282.6Link to Protein Sequence:NP_080558.1Re-query CCDS DB by Nucleotide ID:NM_026282Re-query CCDS DB by Protein ID:NP_080558Link to BLAST:NP_080558.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080558.1 201 Q9D083-1 201 100% 0 0

Chromosomal Locations for CCDS 40554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21756177 21756295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21757117 21757193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21757290 21757394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21757685 21757829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21760119 21760278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCGGCTTTCCGCGACATGGTGGAGGTGAGCAACTGGCTACTGAGCCTGCTGGGGGCCAACCGCGCCG
AGGCGCAGCAGCGGCGGCTGCTCGGGAGCTACGAGCAGATGATGGAGCGGCTGCTGGAGATGCAGGACGG
CGCCTACCGGCAGCTTCGGGAGACTCTGGCTGTGGAGGAGGAAGTGGCTCAGAGCCTTCTTGAACTGAAA
GAATGTACGCGCCAGGGGGACACCGAGCTGCAGCAGCTGGAGGTGGAGCTCCAGAGGACCAGCAAGGAGG
ACACCTGTGTGCAGGCTAGGCTACGTCAGCTCATCACAGAGCTGCAGGAGCTCAGGGAGATGGAGGAAGA
GCTCCAGCGCCAGGAGAGGGATGTAGATGAGGACAACACCGTCACCATCCCCTCTGCAGTGTATGTGGCT
CATCTCTATCACCAAATTAGTAAAATACAGTGGGATTATGAATGCGAGCCAGGGATGATCAAGGGCATCC
ACCACGGCCCCACAGTGGCCCAGCCCATCCACTTGGACAGTGCACAGCTCTCGCCGAAGTTCATCAGTGA
CTACCTCTGGAGCCTGGTGGACACCACGTGGGAGCCAGAGCCTTGA

Translation (201 aa):
MAAFRDMVEVSNWLLSLLGANRAEAQQRRLLGSYEQMMERLLEMQDGAYRQLRETLAVEEEVAQSLLELK
ECTRQGDTELQQLEVELQRTSKEDTCVQARLRQLITELQELREMEEELQRQERDVDEDNTVTIPSAVYVA
HLYHQISKIQWDYECEPGMIKGIHHGPTVAQPIHLDSAQLSPKFISDYLWSLVDTTWEPEP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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