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Report for CCDS40737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40737.1 Public Mus musculus 9 Gm1123 23 108 98 CCDS HistoryNCBI Gene:382097Re-query CCDS DB by CCDS ID:40737.1Re-query CCDS DB by GeneID:382097See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076730.7 ENSMUSP00000076020.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076730.7Link to Ensembl Protein Viewer:ENSMUSP00000076020.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076730Re-query CCDS DB by Protein ID:ENSMUSP00000076020
Original member Current member NCBI NM_001080776.1 NP_001074245.1 Accepted alive Link to Nucleotide Sequence:NM_001080776.1Link to Protein Sequence:NP_001074245.1Re-query CCDS DB by Nucleotide ID:NM_001080776Re-query CCDS DB by Protein ID:NP_001074245Link to BLAST:NP_001074245.1

Chromosomal Locations for CCDS 40737.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 99007062 99007066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99009227 99009431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99010961 99011130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99014033 99014237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99015964 99016133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99018384 99018588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99023243 99023412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 99035581 99035623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGTGTTTCTGCTGGGCTTCCTGTTCCTGTGTGGAGTCACGGATCACATTGGGAGTGTGAGCATCACTA
CTCCAGAGCAGACAATTCAGGAAGTCCAAGGGGAAACTGTCCATCTGCCCTGCATGTTCACTCTTAGCCC
TGAGGACCAAGGACCGTTGGACATTGAGTGGCTTCGGCTTTCAGGACCTAATAATGAGGCGATGGACCAT
GTGATTATTTTGTATGCTGTAGATAAAATTTATTCTGACTTCTATCAAGATATGAGAGGGCGAGTGAATT
TTACAAGTAATGGTATCACGTCTGGCGAAGCGTCCATAAAAATAAGAGATGTTCAGCCTGCAGACAGTGG
CACCTACCTGTGCAAAGTGAAAACAGCCCCTGGTGTTGCCAAGACAACCGTTCAGCTGACAGTTGTTGAT
TACATTGGGAGTGTGAGCATCACTACTCCAGAGCAGACAATTGAGAAAGACCAAGGGGAAACTGTCCATC
TGCCCTGCATGTTCACCTTTATCTCCAAGGACCAAGGACCGTTGAACATCGAGTGGCTTCGGCTTTCAGG
ACCTAATAATGAAGCGATGGACCATGTGGTTATTTTATATTCTGCAGACAAAATTCATGACGACGTCTAT
CCAGATCTAAAAGGACGAGTGTATTTTACAAGTAATGATATCAAGTCTGGTGATGCATCCATAAATATAA
CAAATGTCCAGCTCTCGGATGCTGGCACTTATCAGTGCAAGGTGAAAACATACCCTGGCACTGTCAACAG
GAACCTCCAGCTGGCTGTCACTGATCACATTGGGAGTGTGAGCATCACTACTCCAGAGCAGACAATTCAG
AAAGCCCGAGGGGAAACTGTCCATCTGCCCTGCACGTTCACCCTTAGCCCTGAGGACCATGGACCACTGT
TCATTGACTGGATGCAGCTTACTGGACCTCAAAATGAGGTGGTGAACCGCATGTTTATTGTATATTTAGC
AGACAAGATTTACGACAACTTCTATCAAGATATGAAAGGACGTGTGCAATTTACAAGTAATGACATCAGG
TCTGGTGAGGCATCTATAAATATAACTGATGCTCGGCTCTCTGACGCTGGCACCTATCAGTGTGGAGTGT
CCCATGCCTTTGGTACTGCCAAGGGGACCATTCAGCTGACAGTTGTTGGCTGA

Translation (390 aa):
MVFLLGFLFLCGVTDHIGSVSITTPEQTIQEVQGETVHLPCMFTLSPEDQGPLDIEWLRLSGPNNEAMDH
VIILYAVDKIYSDFYQDMRGRVNFTSNGITSGEASIKIRDVQPADSGTYLCKVKTAPGVAKTTVQLTVVD
YIGSVSITTPEQTIEKDQGETVHLPCMFTFISKDQGPLNIEWLRLSGPNNEAMDHVVILYSADKIHDDVY
PDLKGRVYFTSNDIKSGDASINITNVQLSDAGTYQCKVKTYPGTVNRNLQLAVTDHIGSVSITTPEQTIQ
KARGETVHLPCTFTLSPEDHGPLFIDWMQLTGPQNEVVNRMFIVYLADKIYDNFYQDMKGRVQFTSNDIR
SGEASINITDARLSDAGTYQCGVSHAFGTAKGTIQLTVVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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