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Report for CCDS40748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40748.1 Public Mus musculus 9 Cdv3 23 108 98 CCDS HistoryNCBI Gene:321022Re-query CCDS DB by CCDS ID:40748.1Re-query CCDS DB by GeneID:321022See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072249.12 ENSMUSP00000072101.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072249.12Link to Ensembl Protein Viewer:ENSMUSP00000072101.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072249Re-query CCDS DB by Protein ID:ENSMUSP00000072101
Original member NCBI NM_175565.3 NP_780774.1 Updated not alive Link to Nucleotide Sequence:NM_175565.3Link to Protein Sequence:NP_780774.1Re-query CCDS DB by Nucleotide ID:NM_175565Re-query CCDS DB by Protein ID:NP_780774
Current member NCBI NM_175565.4 NP_780774.1 Accepted alive Link to Nucleotide Sequence:NM_175565.4Link to Protein Sequence:NP_780774.1Re-query CCDS DB by Nucleotide ID:NM_175565Re-query CCDS DB by Protein ID:NP_780774Link to BLAST:NP_780774.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780774.1 236 Q4VAA2-2 236 100% 0 0

Chromosomal Locations for CCDS 40748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 103356014 103356029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103356280 103356439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103359876 103360018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103363975 103364051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 103365054 103365368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCCGAGACCGAGGAGCGGAGCCTGGACAACTTCTTCGCCAAGAGGGACAAGAAGAAGAAGAAGGAAC
GGAGCAGTCGCGCGGCCAACGCGGCGAGCGGCGCGGGCGGGAGCAGCGCGGCGGCGGGCTCCAGGCCGGG
CGATGGCGGGAGCCTGGGCTCCGGTGCCAGGTCGGGCGACGGCGGGAGCTTGGGCTCCGGCTCCAGGTCG
GGCGACGGCGGGAGCTCGGGCTCTGGTGCTAGGTCCGGAGACGGCGGGAGCTCGAGGTCCGGAGACGGCG
GGAGCGCGGGCCCCGCCGGCAAGGCCATAACGAAGGATGAAAATGAGTGGAAAGAATTTGAGCAAAGAGA
GGTTGATTACAGCGGATTAAGAGTTCAGGCAATGCAAATAAGTGAAAAGGAAGATGATGATAATGAGAAG
AGAGAAGATCCAGGAGATAATTGGGAAGAAGGTGGAGGTGGCAGTGGAGCAGAAAAATCTTCAGGTCCCT
GGAATAAAACCGCTCCGGTACAAGCGCCTCCTGCTCCAGTAACAGTTACAGAAACCCCGGAGCCAGCAAT
GCCCAGTGGTGTATACAGGCCTCCTGGGGCAAGGCTAACCACAACAAGGAAAACGCCACAAGGACCACCA
GAAATATACAGTGACACGCAGTTCCCATCCCTGCAGTCCACTGCCAAGCATGTAGAGAGCCGGAACAGGT
ACTTAAAATGA

Translation (236 aa):
MAETEERSLDNFFAKRDKKKKKERSSRAANAASGAGGSSAAAGSRPGDGGSLGSGARSGDGGSLGSGSRS
GDGGSSGSGARSGDGGSSRSGDGGSAGPAGKAITKDENEWKEFEQREVDYSGLRVQAMQISEKEDDDNEK
REDPGDNWEEGGGGSGAEKSSGPWNKTAPVQAPPAPVTVTETPEPAMPSGVYRPPGARLTTTRKTPQGPP
EIYSDTQFPSLQSTAKHVESRNRYLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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