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Report for CCDS40753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40753.1 Public Mus musculus 9 Pik3r4 23 108 98 CCDS HistoryNCBI Gene:75669Re-query CCDS DB by CCDS ID:40753.1Re-query CCDS DB by GeneID:75669See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065778.12 ENSMUSP00000067400.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065778.12Link to Ensembl Protein Viewer:ENSMUSP00000067400.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000065778Re-query CCDS DB by Protein ID:ENSMUSP00000067400
Original member Current member EBI ENSMUST00000191268.6 ENSMUSP00000139427.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191268.6Link to Ensembl Protein Viewer:ENSMUSP00000139427.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191268Re-query CCDS DB by Protein ID:ENSMUSP00000139427
Original member Current member NCBI NM_001081309.1 NP_001074778.1 Accepted alive Link to Nucleotide Sequence:NM_001081309.1Link to Protein Sequence:NP_001074778.1Re-query CCDS DB by Nucleotide ID:NM_001081309Re-query CCDS DB by Protein ID:NP_001074778Link to BLAST:NP_001074778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074778.1 1358 Q8VD65 1358 100% 0 0

Chromosomal Locations for CCDS 40753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 105644237 105644969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105648666 105648799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105650317 105650899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105653952 105654086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105654816 105655037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105658419 105658592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105661337 105661482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105663042 105663245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105667732 105667933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105668986 105669173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105669746 105669956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105672644 105672809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105676743 105676907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105678109 105678320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105682185 105682316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105685131 105685231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105686134 105686222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105686346 105686454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 105687115 105687285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4077 nt):
ATGGGAAATCAGCTGGCTGGCATCGCTCCTTCCCAGATCCTGTCTGTAGAGAGTTATTTCTCAGACATCC
ATGACTTTGAGTATGATAAGAGCCTGGGAAGCACTCGGTTTTTTAAAGTCGCTCGAGCCAAGCACCGGGA
AGGCCTGGTGGTTGTGAAGGTCTTTGCAATTCAGGATCCCACGTTACCCTTAACTAGTTATAAACAGGAG
CTGGAGGAACTGAAAATCAGGCTCCACTCCGCCCAGAACTGCCTCCCCTTCCAGAAAGCAGCAGAAAAGG
CGTCTGAGAAAGCAGCCATGCTGTTCCGGCAGTATGTGAGAGACAACCTCTACGATCGCATCAGTACCCG
CCCGTTCCTAAACAACATCGAGAAGCGCTGGATCGCCTTCCAGATCCTGACGGCCGTGGACCAAGCGCAC
AAATCTGGAGTCCGCCACGGAGACATCAAGACAGAGAATGTGATGGTCACCAGTTGGAACTGGGTCCTCC
TAACCGACTTCGCCAGTTTTAAGCCCACGTATCTTCCCGAGGACAACCCAGCGGATTTCAACTATTTCTT
TGACACCTCGAGAAGGAGGACATGCTACATAGCTCCCGAGCGCTTCGTTGACGGTGGGATGTTCGCCACC
GAGTTAGAGTACATGAGAGACCCCTCAACCCCGCTTGTCGACCTGAATAGCAATCAGAGAGCGCGGGGAG
AGCTGAAGAGAGCCATGGACATCTTTTCGGCAGGTTGCGTGATAGCTGAGCTCTTTACGGAAGGCGTACC
TTTGTTTGATCTCTCTCAGCTGCTGGCGTATAGAAACGGACATTTTTTCCCTGAACAAGTGCTAAACAAA
ATTGAAGATCGCAGTATCAGAGACTTGGTAACTCAGATGATTAACCGTGAGCCCGAGAAGCGTTTGGAAG
CTGAGGACTACCTGAAGCAGCAGCGAGGCAACGCCTTCCCTGAGATATTTTATACTTTCCTTCAGCCTTA
CATGGCCCAGTTCGCCAAGGAAACCTTTCTCTCTGCAGATGAGCGGATTTTGGTTATACGGAAAGATTTG
GGCAACATTATTCACAACCTCTGTGGACATGATTTGCCAGAAAAAGCAGAAGGGGAGTCCAGGGCCAGTG
GTCTGGTTGTCCTGGTGTCCGTGATAACGTCCTGCCTGCAGACACTGAAGTCCTGCGACTCCAAACTGGC
CGCCTTGGAGCTCATCCTGCATCTGGCCCCCAGACTGAGCGTCGAGATCCTTCTGGATCGCATCACTCCC
TACCTGTTGCATTTCAGCAATGACTCTGTCCCAAGAGTGCGGGCTGAAGCCCTGAGGACACTCACCAAAG
TCCTTGCCCTTGTCCAAGAGGTTCCTCGCAACGATGTCAATATCTATCCAGAGTATATTCTCCCCGGCAT
AGCCCACCTGGCCCAGGATGACGCTACCATCGTCAGACTGGCCTACGCTGAAAACATAGCTCTGTTGGCC
GAGACGGCTCTGCGATTCCTGGAGCTTGTGCAGCTGAAAACTCTCAACATGGAGAACGAGCCCGATAACG
AGGAGGTAGATGAAGCCACGCGTCCTAACGGAGACTATGACACAGAGCTCCAGGCCTTGCATGAGATGGT
CCAGCAGAAGGTGGTCACGTTGCTAAGCGACCCTGAGAATATCGTGAAACAGACGCTGATGGAGAGTGGG
ATCACACGCTTGTGCGTCTTCTTCGGACGCCAGAAGGCCAACGACGTTCTCTTGTCCCACATGATCACTT
TCCTCAATGATAAGAATGATTGGCACCTGCGTGGAGCTTTCTTTGATAGCATAGTCGGTGTGGCTGCCTA
CGTTGGCTGGCAGAGCTCCTCTATCCTCAAGCCCCTGCTCCAGCAAGGCCTCAGCGATGCTGAGGAGTTT
GTCATCGTGAAAGCTCTCAATGCCCTGACCTGCATGTGCCAGCTAGGGCTGCTGCAGAAACCCCATGTCT
ACGAGTTCGCCAGTGATATTGCTCCCTTCCTGTGTCACCCTAACCTGTGGATACGCTATGGCGCTGTGGG
ATTTATCACGGTGGTAGCTCATCAGATCAGTACTGCTGATGTCTACTGCAAGCTCATGCCGTATCTTGAC
CCGTATATTACACAGCCAGTGATACAGATTGAGAGGAAGCTGGTCCTGCTCAGTGTGCTAAAGGAGCCGG
TGAGCCGCTCCATATTTGACTATGCTCTGAGGTCGAAAGACATCGCCAGCTTGTTCAGACATCTCCACAT
GCGCCAGAAGAAGCGAAATGGCTCTCTTCTCGACTGCCCTCCACCTGAGGACCCCACCATAGCGCAACTT
CTGAAGAAGTTGCTCTCACAGGGGATGACTGAAGAAGAGGAAGATAAACTTCTGGCACTGAAGGACTTCA
TGATGAAATCAAATCGAGCCAAAGCTAATGCGGTAGACCAGAGCCACCTCCACGACAGCAGCCAGAAAGG
TGTAATCGACTTGGCCGCCTTAGGCATCACTGGGAGACAAGTTGATCTTGTTAAAACCAAACAAGAACCA
GATGAGAAACGTGCTAGGAAACATGTGAAACAAGACTCCAATGTAAATGAAGAGTGGAAAAGCATGTTTG
GGTCATTGGAGCCACCGAATATCCCACAGGCCCTGCCTAAAACCAGTGACCATGAGGTTGTTCAGCCTGG
GAAGCCACCTCGCTCTGAGTCCTCTGCTGGTATCTGTGTCCCTTTGTCAACGTCTCCACAGGTCTCAGAA
GCAGCTCACATCCCAAGTAAGAAGCCTGTGATCCCGGTTGTGAGTAGCACGGTCCTGCCGTCCACTTACC
AGATCCGCATCACCACGTGCAAGACTGAACTTCAGCAGCTCATACAGCAGAAGAGGGAGCAGTGCAACGC
GGAGCGCATAGCCAAGCAGATGATGGAGAATGCCGAGTGGGAGAGCAAGCCACCTCCACCTGGGTGGCGT
CCTAAAGGGCTGCTAGTTGCACATCTTCATGAGCACAAATCTGCTGTGAATCGCATCAGAGTCTCTGATG
AACACTTACTTTTTGCAACATGTTCAAATGATGGCACAGTGAAGATCTGGAACAGCCAGAAGATGGAGGG
GAAGACCACCACAACGCGGTCTATTCTCACGTACAGCCGAATTGGAGGACGAGTCAAGACGCTAACGTTT
TGCCAAGGCTCCCACTACTTGGCCATAGCATCTGATAATGGTGCTGTCCAGCTTCTTGGAATTGAGGCGT
CTAAGTTACCCAAGTCTCCTAAAATTCACCCTCTACAAAGCAGGATTCTGGATCAGAAGGAAGATGGCTG
TGTGGTGGACATGCATCACTTCAACTCCGGGGCACAGTCCGTTCTTGCCTATGCCACGGTGAATGGCTCT
CTGGTTGGATGGGATCTCAGGTCTTCAAGCAACGCGTGGACATTAAAGCATGACCTAAAGTCAGGCCTCA
TCACTTCCTTTGCCGTGGACATCCACCAGTGCTGGCTGTGCATAGGCACGAGCAGCGGTGCCATGGCGTG
TTGGGACATGAGGTTCCAGTTGCCCATCTCCAGTCACTGTCATCCCTCCAGAGCTCGCATCCGGCGCCTC
TCCATGCACCCCCTGTACCAGTCCTGGGTAATCGCAGCTGTTCAGGGCAACAATGAAGTCTCCATGTGGG
ACATGGAAACTGGCGACAGGAGACTGACTCTCTGGGCCAGCAGCGCACCGCCACTGTCTGAATTACAGCC
TTCACCGCACAGCGTCCATGGCATCTACTGCAGCCCTGCAGATGGAAACCCTATCCTGCTGACCGCTGGC
TCAGACATGAAAATAAGGTTCTGGGACTTGGTTTCCCCAGAGAGGTCCTATGTTGTTGCGGGAAGTACAG
GTTCCCCGTCTGTCTCCTACTACAAGAAGATAATAGAAGGCACCGAGGTCGTCCAGGAAATTCAGAATAA
GCAGAAGGTTGGACCGAGTGATGATACCCCTCGGAGGGGCCCGGAGTCTCTGCCTGTGGGACATCATGAC
ATCATCACAGACATTGCCACCTTCCAGACCACTCAGGGCTTCATTGTGACTGCTTCTAGAGACGGAATTG
TGAAGGTGTGGAAATAA

Translation (1358 aa):
MGNQLAGIAPSQILSVESYFSDIHDFEYDKSLGSTRFFKVARAKHREGLVVVKVFAIQDPTLPLTSYKQE
LEELKIRLHSAQNCLPFQKAAEKASEKAAMLFRQYVRDNLYDRISTRPFLNNIEKRWIAFQILTAVDQAH
KSGVRHGDIKTENVMVTSWNWVLLTDFASFKPTYLPEDNPADFNYFFDTSRRRTCYIAPERFVDGGMFAT
ELEYMRDPSTPLVDLNSNQRARGELKRAMDIFSAGCVIAELFTEGVPLFDLSQLLAYRNGHFFPEQVLNK
IEDRSIRDLVTQMINREPEKRLEAEDYLKQQRGNAFPEIFYTFLQPYMAQFAKETFLSADERILVIRKDL
GNIIHNLCGHDLPEKAEGESRASGLVVLVSVITSCLQTLKSCDSKLAALELILHLAPRLSVEILLDRITP
YLLHFSNDSVPRVRAEALRTLTKVLALVQEVPRNDVNIYPEYILPGIAHLAQDDATIVRLAYAENIALLA
ETALRFLELVQLKTLNMENEPDNEEVDEATRPNGDYDTELQALHEMVQQKVVTLLSDPENIVKQTLMESG
ITRLCVFFGRQKANDVLLSHMITFLNDKNDWHLRGAFFDSIVGVAAYVGWQSSSILKPLLQQGLSDAEEF
VIVKALNALTCMCQLGLLQKPHVYEFASDIAPFLCHPNLWIRYGAVGFITVVAHQISTADVYCKLMPYLD
PYITQPVIQIERKLVLLSVLKEPVSRSIFDYALRSKDIASLFRHLHMRQKKRNGSLLDCPPPEDPTIAQL
LKKLLSQGMTEEEEDKLLALKDFMMKSNRAKANAVDQSHLHDSSQKGVIDLAALGITGRQVDLVKTKQEP
DEKRARKHVKQDSNVNEEWKSMFGSLEPPNIPQALPKTSDHEVVQPGKPPRSESSAGICVPLSTSPQVSE
AAHIPSKKPVIPVVSSTVLPSTYQIRITTCKTELQQLIQQKREQCNAERIAKQMMENAEWESKPPPPGWR
PKGLLVAHLHEHKSAVNRIRVSDEHLLFATCSNDGTVKIWNSQKMEGKTTTTRSILTYSRIGGRVKTLTF
CQGSHYLAIASDNGAVQLLGIEASKLPKSPKIHPLQSRILDQKEDGCVVDMHHFNSGAQSVLAYATVNGS
LVGWDLRSSSNAWTLKHDLKSGLITSFAVDIHQCWLCIGTSSGAMACWDMRFQLPISSHCHPSRARIRRL
SMHPLYQSWVIAAVQGNNEVSMWDMETGDRRLTLWASSAPPLSELQPSPHSVHGIYCSPADGNPILLTAG
SDMKIRFWDLVSPERSYVVAGSTGSPSVSYYKKIIEGTEVVQEIQNKQKVGPSDDTPRRGPESLPVGHHD
IITDIATFQTTQGFIVTASRDGIVKVWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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