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Report for CCDS40755.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40755.1 Public Mus musculus 9 Tlr9 23 108 98 CCDS HistoryNCBI Gene:81897Re-query CCDS DB by CCDS ID:40755.1Re-query CCDS DB by GeneID:81897See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40755.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062241.10 ENSMUSP00000082207.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062241.10Link to Ensembl Protein Viewer:ENSMUSP00000082207.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062241Re-query CCDS DB by Protein ID:ENSMUSP00000082207
Original member Current member NCBI NM_031178.2 NP_112455.2 Accepted alive Link to Nucleotide Sequence:NM_031178.2Link to Protein Sequence:NP_112455.2Re-query CCDS DB by Nucleotide ID:NM_031178Re-query CCDS DB by Protein ID:NP_112455Link to BLAST:NP_112455.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112455.2 1032 Q9EQU3 1032 100% 0 0

Chromosomal Locations for CCDS 40755.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 106222704 106222706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 106223515 106226610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGGTTCTCCGTCGAAGGACTCTGCACCCCTTGTCCCTCCTGGTACAGGCTGCAGTGCTGGCTGAGACTC
TGGCCCTGGGTACCCTGCCTGCCTTCCTACCCTGTGAGCTGAAGCCTCATGGCCTGGTGGACTGCAATTG
GCTGTTCCTGAAGTCTGTACCCCGTTTCTCTGCGGCAGCATCCTGCTCCAACATCACCCGCCTCTCCTTG
ATCTCCAACCGTATCCACCACCTGCACAACTCTGACTTCGTCCACCTGTCCAACCTGCGGCAGCTGAACC
TCAAGTGGAACTGTCCACCCACTGGCCTTAGCCCCCTGCACTTCTCTTGCCACATGACCATTGAGCCCAG
AACCTTCCTGGCTATGCGTACACTGGAGGAGCTGAACTTGAGCTATAATGGTATCACCACTGTGCCCCGA
CTGCCCAGCTCCCTGGTGAATCTGAGCCTGAGCCACACCAACATCCTGGTTCTAGATGCTAACAGCCTCG
CCGGCCTATACAGCCTGCGCGTTCTCTTCATGGACGGGAACTGCTACTACAAGAACCCCTGCACAGGAGC
GGTGAAGGTGACCCCAGGCGCCCTCCTGGGCCTGAGCAATCTCACCCATCTGTCTCTGAAGTATAACAAC
CTCACAAAGGTGCCCCGCCAACTGCCCCCCAGCCTGGAGTACCTCCTGGTGTCCTATAACCTCATTGTCA
AGCTGGGGCCTGAAGACCTGGCCAATCTGACCTCCCTTCGAGTACTTGATGTGGGTGGGAATTGCCGTCG
CTGTGACCATGCCCCCAATCCCTGTATAGAATGTGGCCAAAAGTCCCTCCACCTGCACCCTGAGACCTTC
CATCACCTGAGCCATCTGGAAGGCCTGGTGCTGAAGGACAGCTCTCTCCATACACTGAACTCTTCCTGGT
TCCAAGGTCTGGTCAACCTCTCGGTGCTGGACCTAAGCGAGAACTTTCTCTATGAAAGCATCACCCACAC
CAATGCCTTTCAGAACCTAACCCGCCTGCGCAAGCTCAACCTGTCCTTCAATTACCGCAAGAAGGTATCC
TTTGCCCGCCTCCACCTGGCAAGTTCCTTTAAGAACCTGGTGTCACTGCAGGAGCTGAACATGAACGGCA
TCTTCTTCCGCTTGCTCAACAAGTACACGCTCAGATGGCTGGCCGATCTGCCCAAACTCCACACTCTGCA
TCTTCAAATGAACTTCATCAACCAGGCACAGCTCAGCATCTTTGGTACCTTCCGAGCCCTTCGCTTTGTG
GACTTGTCAGACAATCGCATCAGTGGGCCTTCAACGCTGTCAGAAGCCACCCCTGAAGAGGCAGATGATG
CAGAGCAGGAGGAGCTGTTGTCTGCGGATCCTCACCCAGCTCCGCTGAGCACCCCTGCTTCTAAGAACTT
CATGGACAGGTGTAAGAACTTCAAGTTCACCATGGACCTGTCTCGGAACAACCTGGTGACTATCAAGCCA
GAGATGTTTGTCAATCTCTCACGCCTCCAGTGTCTTAGCCTGAGCCACAACTCCATTGCACAGGCTGTCA
ATGGCTCTCAGTTCCTGCCGCTGACTAATCTGCAGGTGCTGGACCTGTCCCATAACAAACTGGACTTGTA
CCACTGGAAATCGTTCAGTGAGCTACCACAGTTGCAGGCCCTGGACCTGAGCTACAACAGCCAGCCCTTT
AGCATGAAGGGTATAGGCCACAATTTCAGTTTTGTGACCCATCTGTCCATGCTACAGAGCCTTAGCCTGG
CACACAATGACATTCATACCCGTGTGTCCTCACATCTCAACAGCAACTCAGTGAGGTTTCTTGACTTCAG
CGGCAACGGTATGGGCCGCATGTGGGATGAGGGGGGCCTTTATCTCCATTTCTTCCAAGGCCTGAGTGGC
CTGCTGAAGCTGGACCTGTCTCAAAATAACCTGCATATCCTCCGGCCCCAGAACCTTGACAACCTCCCCA
AGAGCCTGAAGCTGCTGAGCCTCCGAGACAACTACCTATCTTTCTTTAACTGGACCAGTCTGTCCTTCCT
ACCCAACCTGGAAGTCCTAGACCTGGCAGGCAACCAGCTAAAGGCCCTGACCAATGGCACCCTGCCTAAT
GGCACCCTCCTCCAGAAACTCGATGTCAGTAGCAACAGTATCGTCTCTGTGGTCCCAGCCTTCTTCGCTC
TGGCGGTCGAGCTGAAAGAGGTCAACCTCAGCCACAACATTCTCAAGACGGTGGATCGCTCCTGGTTTGG
GCCCATTGTGATGAACCTGACAGTTCTAGACGTGAGAAGCAACCCTCTGCACTGTGCCTGTGGGGCAGCC
TTCGTAGACTTACTGTTGGAGGTGCAGACCAAGGTGCCTGGCCTGGCTAATGGTGTGAAGTGTGGCAGCC
CCGGCCAGCTGCAGGGCCGTAGCATCTTCGCGCAGGACCTGCGGCTGTGCCTGGATGAGGTCCTCTCTTG
GGACTGCTTTGGCCTTTCACTCTTGGCTGTGGCCGTGGGCATGGTGGTGCCTATACTGCACCATCTCTGC
GGCTGGGACGTCTGGTACTGTTTTCATCTGTGCCTGGCATGGCTACCTTTGCTAGCCCGCAGCCGACGCA
GCGCCCAAACTCTCCCTTATGATGCCTTCGTGGTGTTCGATAAGGCACAGAGCGCAGTTGCCGACTGGGT
GTATAACGAGCTGCGGGTGCGGCTGGAGGAGCGGCGCGGCCGCCGAGCCCTACGCTTGTGTCTGGAGGAC
CGAGATTGGCTGCCTGGCCAGACGCTCTTCGAGAACCTCTGGGCTTCCATCTATGGGAGCCGCAAGACTC
TATTTGTGCTGGCCCACACGGACCGCGTCAGTGGCCTCCTGCGCACCAGCTTCCTGCTGGCTCAGCAGCG
CCTGTTGGAAGACCGCAAGGACGTGGTGGTGTTGGTGATCCTGCGTCCGGATGCCCACCGCTCCCGCTAT
GTGCGACTGCGCCAGCGTCTCTGCCGCCAGAGTGTGCTCTTCTGGCCCCAGCAGCCCAACGGGCAGGGGG
GCTTCTGGGCCCAGCTGAGTACAGCCCTGACTAGGGACAACCGCCACTTCTATAACCAGAACTTCTGCCG
GGGACCTACAGCAGAATAG

Translation (1032 aa):
MVLRRRTLHPLSLLVQAAVLAETLALGTLPAFLPCELKPHGLVDCNWLFLKSVPRFSAAASCSNITRLSL
ISNRIHHLHNSDFVHLSNLRQLNLKWNCPPTGLSPLHFSCHMTIEPRTFLAMRTLEELNLSYNGITTVPR
LPSSLVNLSLSHTNILVLDANSLAGLYSLRVLFMDGNCYYKNPCTGAVKVTPGALLGLSNLTHLSLKYNN
LTKVPRQLPPSLEYLLVSYNLIVKLGPEDLANLTSLRVLDVGGNCRRCDHAPNPCIECGQKSLHLHPETF
HHLSHLEGLVLKDSSLHTLNSSWFQGLVNLSVLDLSENFLYESITHTNAFQNLTRLRKLNLSFNYRKKVS
FARLHLASSFKNLVSLQELNMNGIFFRLLNKYTLRWLADLPKLHTLHLQMNFINQAQLSIFGTFRALRFV
DLSDNRISGPSTLSEATPEEADDAEQEELLSADPHPAPLSTPASKNFMDRCKNFKFTMDLSRNNLVTIKP
EMFVNLSRLQCLSLSHNSIAQAVNGSQFLPLTNLQVLDLSHNKLDLYHWKSFSELPQLQALDLSYNSQPF
SMKGIGHNFSFVTHLSMLQSLSLAHNDIHTRVSSHLNSNSVRFLDFSGNGMGRMWDEGGLYLHFFQGLSG
LLKLDLSQNNLHILRPQNLDNLPKSLKLLSLRDNYLSFFNWTSLSFLPNLEVLDLAGNQLKALTNGTLPN
GTLLQKLDVSSNSIVSVVPAFFALAVELKEVNLSHNILKTVDRSWFGPIVMNLTVLDVRSNPLHCACGAA
FVDLLLEVQTKVPGLANGVKCGSPGQLQGRSIFAQDLRLCLDEVLSWDCFGLSLLAVAVGMVVPILHHLC
GWDVWYCFHLCLAWLPLLARSRRSAQTLPYDAFVVFDKAQSAVADWVYNELRVRLEERRGRRALRLCLED
RDWLPGQTLFENLWASIYGSRKTLFVLAHTDRVSGLLRTSFLLAQQRLLEDRKDVVVLVILRPDAHRSRY
VRLRQRLCRQSVLFWPQQPNGQGGFWAQLSTALTRDNRHFYNQNFCRGPTAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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