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Report for CCDS40789.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40789.1 Public Mus musculus 9 Ubp1 23 108 98 CCDS HistoryNCBI Gene:22221Re-query CCDS DB by CCDS ID:40789.1Re-query CCDS DB by GeneID:22221See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40789.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009885.13 ENSMUSP00000009885.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009885.13Link to Ensembl Protein Viewer:ENSMUSP00000009885.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000009885Re-query CCDS DB by Protein ID:ENSMUSP00000009885
Original member Current member EBI ENSMUST00000116492.2 ENSMUSP00000112192.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116492.2Link to Ensembl Protein Viewer:ENSMUSP00000112192.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116492Re-query CCDS DB by Protein ID:ENSMUSP00000112192
Original member Current member EBI ENSMUST00000214095.1 ENSMUSP00000149908.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214095.1Link to Ensembl Protein Viewer:ENSMUSP00000149908.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214095Re-query CCDS DB by Protein ID:ENSMUSP00000149908
Original member NCBI NM_013699.2 NP_038727.1 Updated not alive Link to Nucleotide Sequence:NM_013699.2Link to Protein Sequence:NP_038727.1Re-query CCDS DB by Nucleotide ID:NM_013699Re-query CCDS DB by Protein ID:NP_038727
Current member NCBI NM_013699.3 NP_038727.1 Accepted alive Link to Nucleotide Sequence:NM_013699.3Link to Protein Sequence:NP_038727.1Re-query CCDS DB by Nucleotide ID:NM_013699Re-query CCDS DB by Protein ID:NP_038727Link to BLAST:NP_038727.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038727.1 504 Q811S7-2 504 100% 0 0

Chromosomal Locations for CCDS 40789.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 113931654 113931766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113944848 113944999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113951608 113951684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113955963 113956068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113956707 113956813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113958598 113958750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113958829 113958939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113964552 113964655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113966235 113966289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113966492 113966585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113969326 113969416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113970142 113970260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113972751 113972893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113973519 113973570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 113975346 113975383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGCCTGGGTGCTCAGTATGGACGAGGTGATCGAGTCCGGGCTGGTGCACGACTTCGACTCCAGCCTGT
CCGGCATCGGGCAGGAGCTGGGCGCCGGCGCCTACAGCATGAGTGATGTGTTGGCATTGCCCATTTTCAA
GCAAGAAGATTCCAGTCTTTCCTTGGAAGATGAGGCCAAGCACCCCCCCTTCCAATATGTAATGTGTGCT
GCAACTTCGCCAGCCGTTAAGCTGCACGACGAGACACTTACTTACTTGAACCAAGGCCAGTCTTATGAAA
TTCGGATGCTGGATAATCGCAAAATGGGAGACATGCCTGAGCTCAGTGGGAAGTTGGTAAAGAGCATCAT
AAGGGTGGTGTTCCATGACAGGCGGCTACAGTACACAGAACATCAGCAGCTTGAAGGCTGGAAGTGGAAT
CGTCCAGGAGACAGGCTTCTCGATTTAGATATTCCAATGTCTGTGGGAATAATTGACACAAGGACAAATC
CAAGCCAGTTAAATGCAGTTGAATTTCTGTGGGACCCTGCAAAGCGCACATCTGCCTTCATTCAGGTACA
TTGTATCAGCACAGAATTCACCCCGCGTAAGCATGGAGGTGAAAAAGGAGTGCCTTTCAGGATCCAGGTT
GACACCTTTAAGCAGAATGAAAACGGGGAATACACAGATCATCTTCACTCAGCCAGCTGCCAAATCAAAG
TCTTTAAGCCTAAAGGTGCAGACAGAAAACAAAAAAATGACCGAGAAAAGATGGAGAAGAGAACAGCTCA
TGAAAAAGAAAAGTACCAGCCATCTTACGACACCACCATTCTCACAGAGTGTTCTCCATGGCCCGACACC
CCTACAGCCTATGTGAACAACAGCCCTTCCCCAGCGCCCACTTTCACCTCCTCACAACCGAGCACGTGCA
GTGTCCCAGACAGCAATTCTTCATCCCCAAATCACCAGGGAGATGGAGCTGCACAAGCGTCTGGGGAACA
AATTCAGCCTTCAGCTACAACCCAGGAAACACAGCAGTGGCTGCTCAAAAACAGGTTCTCTTCCTACACA
AGACTGTTCTCTAATTTTTCAGGTGCCGACTTATTAAAGCTGACAAAGGAGGATTTAGTTCAGATTTGTG
GTGCAGCCGATGGAATTCGGCTCTATAATTCCCTGAAGTCAAGGTCGGTTAGGCCCCGCTTAACCATCTA
TGTCTGCCAGGAGCAGCCGAGTAGCACCGCGCTGCAAGGGCAGCCACAAGCTGCAGGCAGTGGAGGTGAA
AGTGGCGGTGGGACGCCCTCCGTTTATCATGCAATCTACTTGGAAGAAATGGTTGCCTCAGAAGTTGCTC
GAAAACTTGCCTCCGTGTTTAATATTCCTTTCCACCAAATTAACCAGGTTTACAGACAGGGCCCCACTGG
TATCCACATTCTTGTTAGTGACCAGATGGTTCAGAACTTTCAAGATGAAACTTGTTTTTTATTCTCCACA
GTAAAAGCTGAAAATAATGATGGTATTCACATAATTTTGAAGTGA

Translation (504 aa):
MAWVLSMDEVIESGLVHDFDSSLSGIGQELGAGAYSMSDVLALPIFKQEDSSLSLEDEAKHPPFQYVMCA
ATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPELSGKLVKSIIRVVFHDRRLQYTEHQQLEGWKWN
RPGDRLLDLDIPMSVGIIDTRTNPSQLNAVEFLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQV
DTFKQNENGEYTDHLHSASCQIKVFKPKGADRKQKNDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDT
PTAYVNNSPSPAPTFTSSQPSTCSVPDSNSSSPNHQGDGAAQASGEQIQPSATTQETQQWLLKNRFSSYT
RLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCQEQPSSTALQGQPQAAGSGGE
SGGGTPSVYHAIYLEEMVASEVARKLASVFNIPFHQINQVYRQGPTGIHILVSDQMVQNFQDETCFLFST
VKAENNDGIHIILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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