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Report for CCDS40952.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40952.1 Public Mus musculus X Stag2 23 108 98 CCDS HistoryNCBI Gene:20843Re-query CCDS DB by CCDS ID:40952.1Re-query CCDS DB by GeneID:20843See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40952.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069619.13 ENSMUSP00000063250.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069619.13Link to Ensembl Protein Viewer:ENSMUSP00000063250.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000069619Re-query CCDS DB by Protein ID:ENSMUSP00000063250
Original member Current member EBI ENSMUST00000115072.7 ENSMUSP00000110724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115072.7Link to Ensembl Protein Viewer:ENSMUSP00000110724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115072Re-query CCDS DB by Protein ID:ENSMUSP00000110724
Original member Current member NCBI NM_001077712.2 NP_001071180.1 Accepted alive Link to Nucleotide Sequence:NM_001077712.2Link to Protein Sequence:NP_001071180.1Re-query CCDS DB by Nucleotide ID:NM_001077712Re-query CCDS DB by Protein ID:NP_001071180Link to BLAST:NP_001071180.1
Original member Current member NCBI NM_001358225.1 NP_001345154.1 Accepted alive Link to Nucleotide Sequence:NM_001358225.1Link to Protein Sequence:NP_001345154.1Re-query CCDS DB by Nucleotide ID:NM_001358225Re-query CCDS DB by Protein ID:NP_001345154Link to BLAST:NP_001345154.1
Original member Current member NCBI NM_021465.4 NP_067440.3 Accepted alive Link to Nucleotide Sequence:NM_021465.4Link to Protein Sequence:NP_067440.3Re-query CCDS DB by Nucleotide ID:NM_021465Re-query CCDS DB by Protein ID:NP_067440Link to BLAST:NP_067440.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001071180.1 1231 O35638 1231 100% 0 0
NP_001345154.1 1231 O35638 1231 100% 0 0
NP_067440.3 1231 O35638 1231 100% 0 0

Chromosomal Locations for CCDS 40952.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 42201951 42201994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42206046 42206124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42211078 42211242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42217335 42217431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42220978 42221054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42223246 42223450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42224928 42225079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42226789 42226862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42228211 42228334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42229124 42229222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42229319 42229398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42233871 42233978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42234646 42234757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42236289 42236406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42236951 42237054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42246966 42247058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42247179 42247268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42247850 42248053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42250005 42250075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42250332 42250419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42250521 42250601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42253054 42253146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42253677 42253851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42256855 42256994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42258026 42258127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42259355 42259503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42260604 42260732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42262659 42262882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42266086 42266275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42269381 42269507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42271245 42271322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 42275263 42275286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3696 nt):
ATGATAGCAGCTCCAGAAATACCAACTGATTTTAATCTACTGCAGGAGTCAGAGACACACTTTTCTTCTG
ACACAGATTTTGAAGACATTGAAGGAAAAAATCAGAAGCAAGGCAAAGGCAAAACTTGTAAAAAAGGCAA
AAAGGGTCCAGCAGAAAAGGGTAAAAGTGGAAATGGAGGAGGAAAACCTCCTTCTGGCTCAAACCGAATG
AACGGTCATCATCAACAGAATGGAGTTGAAAACATGATGTTGTTCGAAGTTGTTAAAATGGGCAAGAGTG
CTATGCAGTCGGTGGTAGATGACTGGATCGAGTCCTACAAGCATGACCGGGACATAGCGCTTCTTGACCT
TATCAATTTCTTTATTCAGTGCTCAGGCTGCAAAGGAGTCGTCACAGCAGAGATGTTCAGACATATGCAG
AACTCTGAGATAATTCGAAAAATGACAGAAGAATTTGACGAGGATAGTGGGGATTACCCACTTACCATGG
CTGGTCCTCAGTGGAAGAAGTTCAAGTCCAGCTTCTGTGAGTTCATTGGTGTGTTAGTACGGCAGTGTCA
ATACAGTATCATATATGATGAGTACATGATGGATACTGTCATTTCACTTCTTACTGGATTGTCTGACTCC
CAAGTCAGAGCATTTCGACATACAAGCACCCTGGCAGCTATGAAGTTGATGACTGCTTTGGTAAATGTGG
CACTAAATCTTAGCATTAATATGGATAACACACAAAGACAGTACGAGGCAGAACGGAATAAAATGATTGG
AAAACGAGCTAACGAAAGGCTAGAACTCCTGTTACAAAAGCGTAAAGAGCTTCAGGAAAATCAAGATGAG
ATAGAAAATATGATGAATGCAATATTTAAAGGAGTGTTTGTACATAGATACAGGGATGCAATAGCTGAAA
TCAGAGCTATATGCATTGAAGAGATTGGCATTTGGATGAAGATGTATAGTGATGCCTTCCTTAATGACAG
CTATTTAAAATATGTTGGTTGGACTATGCATGATAAGCAAGGTGAAGTCAGACTCAAATGTCTTACTGCT
TTACAAGGGCTTTACTATAACAAAGAACTTAATTCCAAACTGGAACTCTTTACCAGTCGATTCAAGGATA
GAATTGTGTCTATGACCCTTGACAAAGAATATGATGTTGCAGTACAAGCAATAAAGTTACTCACTCTTGT
TTTACAGAGTAGTGAAGAAGTTCTAACTGCAGAAGATTGTGAAAATGTCTATCATCTGGTTTATTCAGCT
CACCGGCCAGTAGCAGTTGCAGCTGGAGAATTTCTCTACAAAAAGCTCTTCAGCCGCAGAGACCCAGAAG
AGGATGGGCTGATGAAAAGAAGGGGAAGGCAAGGCCCGAATGCCAACCTTGTGAAGACTTTGGTGTTTTT
CTTTTTGGAAAGTGAGTTACACGAGCATGCAGCTTACCTTGTGGACAGCATGTGGGATTGTGCTACTGAG
CTCCTGAAAGACTGGGAATGTATGAATAGCTTGTTATTAGAAGAGCCTCTTAGTGGAGAGGAAGCTCTAA
CAGACAGACAAGAGAGTGCTTTGATTGAAATAATGCTTTGTACTATTAGACAAGCAGCTGAATGTCATCC
TCCCGTGGGAAGAGGGACAGGAAAAAGGGTGCTGACAGCAAAGGAGAAGAAGACACAGTTGGATGACAGA
ACAAGAATCACTGAGCTGTTTGCTGTGGCCCTTCCGCAGTTATTAGCTAAATACTCTGTAGATGCAGAAA
AGGTGACCAATTTGTTGCAGTTACCTCAGTACTTTGATTTGGAGATATACACCACTGGACGATTAGAAAA
GCATTTGGATGCCTTATTGCGCCAGATCCGAAATATTGTAGAGAAGCACACAGACACAGATGTTTTGGAA
GCATGTTCTAAAACTTACCATGCATTATGTAACGAAGAGTTCACCATCTTCAACAGAGTAGATATTTCAA
GAAGTCAGCTGATTGATGAACTGGCAGATAAATTTAACCGGCTTCTTGAAGATTTTCTGCAAGAGGGAGA
AGAACCTGATGAAGATGACGCATATCAGGTATTGTCAACATTGAAGAGGATCACTGCTTTTCATAATGCT
CATGATCTTTCAAAGTGGGATTTGTTCGCTTGTAATTACAAACTCTTGAAAACCGGAATCGAAAATGGAG
ATATGCCTGAGCAGATTGTTATTCACGCACTGCAGTGTGCTCACTATGTAATCCTTTGGCAGCTTGCTAA
GATCACTGAAAGCACGTCTACAAAGGAGGACTTACTGCGCTTAAAGAAACAGATGAGGGTATTTTGCCAG
ATATGTCAGCATTACTTGACCAACGTGAATACTACTGTTAAAGAACAGGCCTTCACTATTCTGTGTGACA
TTTTGATGATCTTCAGTCACCAGATTATGTCTGGAGGGCGTGACATGTTAGAGCCATTAGTTTATACTCC
TGATTCTTCATTGCAGTCTGAGTTGCTCAGCTTTATTTTGGATCATGTCTTCATTGAACAGGATGATGAT
AGTAATAGTGCAGATGGTCAGCAAGAGGATGAAGCCAGCAAAATTGAAGCTTTGCACAAGAGGAGAAATT
TACTTGCAGCATTTTGTAAGCTAATTGTATATACCGTGGTGGAGATGAACACAGCTGCAGATATCTTCAA
GCAGTATATGAAGTATTATAATGATTATGGCGATATCATCAAAGAAACAATGAGTAAAACAAGGCAGATT
GACAAAATTCAGTGTGCTAAGACCCTTATTCTCAGTTTGCAGCAGCTTTTTAATGAGATGATACAAGAGA
ATGGCTATAATTTTGATAGATCATCCTCAACATTTAGTGGCATAAAAGAACTTGCTCGGCGTTTTGCTTT
AACTTTTGGACTTGATCAATTGAAAACCAGAGAAGCCATTGCCATGCTCCACAAAGATGGTATAGAATTT
GCTTTTAAGGAGCCTAATCCACAAGGGGAGAGCCATCCACCTTTAAACTTGGCATTTCTTGATATTCTCA
GTGAATTTTCTTCTAAACTGCTCCGACAGGATAAAAGAACAGTGTATGTTTATTTGGAAAAGTTCATGAC
CTTTCAGATGTCACTCCGAAGAGAAGATGTATGGCTTCCTCTGATGTCTTACCGAAATTCTTTGCTAGCT
GGTGGTGATGATGATACTATGTCAGTCATTAGTGGAATGAGCAGTCGGGGATCAACTGTACGGAGTAAAA
AATCAAAACCATCTACAGGAAAGCGGAAAGTGGTTGAAGGCATGCAACTAGCACTCCCTGAAGAAAGCAG
TAGCAGTGACAGTATGTGGTTGAGCAGAGAGCAAACACTGCACACCCCTGTCATGATGCAGACACCACAG
CTCACCTCCACTATTATGAGAGAACCGAAAAGGTTACGGCCTGAAGATAGCTTCATGAGTGTCTATCCGA
TGCAGGCAGAACACCATCAAACGCCTCTGGATTATAATCGGCGTGGTACAAGCCTAATGGAAGATGATGA
AGAGCCAATTGTTGAAGATGTTATGATGTCCTCAGAAGGAAGGATTGAGGATCTTAATGAGGGAATGGAC
TTTGACACCATGGATATAGACTTGCCACCATCAAAGAATAGAAGAGAGAGAACAGAACTGAAGCCCGATT
TCTTTGATCCAGCTTCAATTATGGATGAATCAGTTCTTGGGGTGTCAATGTTTTAA

Translation (1231 aa):
MIAAPEIPTDFNLLQESETHFSSDTDFEDIEGKNQKQGKGKTCKKGKKGPAEKGKSGNGGGKPPSGSNRM
NGHHQQNGVENMMLFEVVKMGKSAMQSVVDDWIESYKHDRDIALLDLINFFIQCSGCKGVVTAEMFRHMQ
NSEIIRKMTEEFDEDSGDYPLTMAGPQWKKFKSSFCEFIGVLVRQCQYSIIYDEYMMDTVISLLTGLSDS
QVRAFRHTSTLAAMKLMTALVNVALNLSINMDNTQRQYEAERNKMIGKRANERLELLLQKRKELQENQDE
IENMMNAIFKGVFVHRYRDAIAEIRAICIEEIGIWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTA
LQGLYYNKELNSKLELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLQSSEEVLTAEDCENVYHLVYSA
HRPVAVAAGEFLYKKLFSRRDPEEDGLMKRRGRQGPNANLVKTLVFFFLESELHEHAAYLVDSMWDCATE
LLKDWECMNSLLLEEPLSGEEALTDRQESALIEIMLCTIRQAAECHPPVGRGTGKRVLTAKEKKTQLDDR
TRITELFAVALPQLLAKYSVDAEKVTNLLQLPQYFDLEIYTTGRLEKHLDALLRQIRNIVEKHTDTDVLE
ACSKTYHALCNEEFTIFNRVDISRSQLIDELADKFNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNA
HDLSKWDLFACNYKLLKTGIENGDMPEQIVIHALQCAHYVILWQLAKITESTSTKEDLLRLKKQMRVFCQ
ICQHYLTNVNTTVKEQAFTILCDILMIFSHQIMSGGRDMLEPLVYTPDSSLQSELLSFILDHVFIEQDDD
SNSADGQQEDEASKIEALHKRRNLLAAFCKLIVYTVVEMNTAADIFKQYMKYYNDYGDIIKETMSKTRQI
DKIQCAKTLILSLQQLFNEMIQENGYNFDRSSSTFSGIKELARRFALTFGLDQLKTREAIAMLHKDGIEF
AFKEPNPQGESHPPLNLAFLDILSEFSSKLLRQDKRTVYVYLEKFMTFQMSLRREDVWLPLMSYRNSLLA
GGDDDTMSVISGMSSRGSTVRSKKSKPSTGKRKVVEGMQLALPEESSSSDSMWLSREQTLHTPVMMQTPQ
LTSTIMREPKRLRPEDSFMSVYPMQAEHHQTPLDYNRRGTSLMEDDEEPIVEDVMMSSEGRIEDLNEGMD
FDTMDIDLPPSKNRRERTELKPDFFDPASIMDESVLGVSMF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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