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Report for CCDS40962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40962.1 Public Mus musculus X Fsip2l 23 108 98 CCDS HistoryNCBI Gene:209005Re-query CCDS DB by CCDS ID:40962.1Re-query CCDS DB by GeneID:209005See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114928.1 ENSMUSP00000110578.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114928.1Link to Ensembl Protein Viewer:ENSMUSP00000110578.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114928Re-query CCDS DB by Protein ID:ENSMUSP00000110578
Original member Current member NCBI NM_001085499.1 NP_001078968.1 Accepted alive Link to Nucleotide Sequence:NM_001085499.1Link to Protein Sequence:NP_001078968.1Re-query CCDS DB by Nucleotide ID:NM_001085499Re-query CCDS DB by Protein ID:NP_001078968Link to BLAST:NP_001078968.1

Chromosomal Locations for CCDS 40962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48841522 48841640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48842789 48842834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48844331 48844431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48844647 48844718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48845478 48845549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48846235 48846306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48853419 48853490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48854242 48854313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48855067 48855141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48855972 48856043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48856624 48856695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48857475 48857540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48858271 48858339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48872847 48872964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48873431 48873541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48874167 48874308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48875204 48875343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48875659 48875748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48876219 48876380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48876988 48877113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48877517 48877615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGACTTGTACCTAAGCAACTGTATAAAGGCTGCCGAAGCTGCTGCCTCCAAAGCAGCTTCCGGCGACA
TAACAAACAACAAAGATACCTGTAGTAACAAGAAACAGAAACCTACCATTCCAAAGATTGGACCAGCTAA
TCTGTTAGATATGCCTCTCGGGGCCAAACTGCCTGTTATCCCAGGAAGTAATAGTATATTCTACACAACA
AATATAAGTGAAAAGCTTTTCCAGCCTTCTTTTGGCTTTAACCTTAGTGACCCATATTGTAAACTGATGG
AAACCACCTACAAAAGTCTTCATGATCCACACCTAAAATCATACTTCAAACGAAAAGACATTCTCAAGAA
ACTAAAAAAAGAAGGATACATCACCGGCAATAATAAAGTCGTATGTTCATTAAAAGAACTCAACAAATAC
AGACAATATCTGACCACTTTAAAAATCGATTTTGAGCGGAATTATGTAAGAGAACAAAAAATAATTGAAA
ATCAAGTAAACAAACTAAACGAAGAGAGACGGGCCTATGACAATGCTGCCGCTGCTGAGTTTCAGTGGTG
GTTGCTACAAGAAGGGAAAAAAGCTAGCCCTCAACACGAACGCTTGATTAAACTCAGACATTTAAATATG
ATTAATAAAGAACTAGACAAACTTGAAGACACCGTGGGAAAACGAAGTTCACTAGTAATGAAGGAAGAAG
ACAGACAACATTGGGATGATGTTAAAAGAAAACTAAACCTACACCAAGAAGTTGAAGCGGATTGGCAATT
CAAGGAGATGTCACTTATGACAAAGATCGGAGACGAAGTTAAGAGAGAGACAAAAGTTGAAGAACATCAT
CGGAAAATCCGAGAAGAAATTAACCGAAAGAAACAAGTAATGCTACAGAAAAGAATTGCCTACCATTTGC
AAAAGCTTCAAGAGAAGGAAAGTAAAGAAGGAAAGCGGGAAGAAAGTACTTCTGAAAGCAAAAGGCCAAG
TGAAACAGCTTCTTCAATTCAAAAGCAACCAAGTTTCACAGAGCCGAAAATGTCTCAAGAACATCTGGAA
CGAAAAACATCTATATCAAGTATGAGGACTAGCATCTCCGAAAGACTGATGCAAGAATCGAGGGAATCAA
AATCCATCTCACAAACGACAAGGACCAGTTTTGATGAGGACCAATCATCACTTTACAAACTTCTGGAAAC
AAGATTTTCTCCAATAGCTAGAAGGAGATCAAGTTTGGCTGAGGATCAAGCATTCCAAGAAGTTTTGGAA
CCGAAATACCGTCACCATTCCAGTGGGAAGAAAACAAGTTTTGCTGAAGAGACATTGTTTCATGAACATA
ATGAACAAAAATATGATCCACCAAACACAAAAAGAAGGAGTTTTGCTAACGACAAATTCATGGAAGACCT
TCTAGAAGCAAAATATCTTTATCAAAATACTAAGAGAACAAGTTTCACGGACCAGAAACCAATGGAAGAC
AATCTGCACTCAATATTGACTTCACCCAGTACAAGGAGAACAAGTGTTTCCGACCAGAGAATGTTTTATG
AACCTATCCAAATAAAATCAGCACCACCAATTATAAAGAAAACAAGTTTTGCTGAGGAAAAATCATTCCA
ACAACTTATGGAAGCAATAATGCCTCCACAGTATGTAAAGAAAACAAGCATCTCAGACCAGAGATCATCT
CAAGAATCTCTAGAAACCAGACGATCAAGCCATCATTCTCAAAATAACATGAAGGTTTTTGTTAAGACAT
CAACGACTTTACCACCTCAACAGAGGGGTATACAAAATACATCAAATCACAAGTATGACAAAGGATCTTC
AAGGACATCACATCATTCACATGACAGAGCTCCTGATCCATCTCACTGTCTGCAATCAACTGCACTTTCC
AGACAACCATGTCATGATATTCCAACACATGAAGTTGATCCTTCTTTTCGAAGAAACACACATAAACACA
GCAAGTGA

Translation (655 aa):
MDLYLSNCIKAAEAAASKAASGDITNNKDTCSNKKQKPTIPKIGPANLLDMPLGAKLPVIPGSNSIFYTT
NISEKLFQPSFGFNLSDPYCKLMETTYKSLHDPHLKSYFKRKDILKKLKKEGYITGNNKVVCSLKELNKY
RQYLTTLKIDFERNYVREQKIIENQVNKLNEERRAYDNAAAAEFQWWLLQEGKKASPQHERLIKLRHLNM
INKELDKLEDTVGKRSSLVMKEEDRQHWDDVKRKLNLHQEVEADWQFKEMSLMTKIGDEVKRETKVEEHH
RKIREEINRKKQVMLQKRIAYHLQKLQEKESKEGKREESTSESKRPSETASSIQKQPSFTEPKMSQEHLE
RKTSISSMRTSISERLMQESRESKSISQTTRTSFDEDQSSLYKLLETRFSPIARRRSSLAEDQAFQEVLE
PKYRHHSSGKKTSFAEETLFHEHNEQKYDPPNTKRRSFANDKFMEDLLEAKYLYQNTKRTSFTDQKPMED
NLHSILTSPSTRRTSVSDQRMFYEPIQIKSAPPIIKKTSFAEEKSFQQLMEAIMPPQYVKKTSISDQRSS
QESLETRRSSHHSQNNMKVFVKTSTTLPPQQRGIQNTSNHKYDKGSSRTSHHSHDRAPDPSHCLQSTALS
RQPCHDIPTHEVDPSFRRNTHKHSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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