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Report for CCDS40985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40985.1 Public Mus musculus X Magea13 23 108 98 CCDS HistoryNCBI Gene:75352Re-query CCDS DB by CCDS ID:40985.1Re-query CCDS DB by GeneID:75352See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062542.4 ENSMUSP00000051134.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062542.4Link to Ensembl Protein Viewer:ENSMUSP00000051134.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062542Re-query CCDS DB by Protein ID:ENSMUSP00000051134
Original member Current member EBI ENSMUST00000118305.7 ENSMUSP00000113812.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118305.7Link to Ensembl Protein Viewer:ENSMUSP00000113812.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118305Re-query CCDS DB by Protein ID:ENSMUSP00000113812
Original member Current member NCBI NM_023774.3 NP_076263.1 Accepted alive Link to Nucleotide Sequence:NM_023774.3Link to Protein Sequence:NP_076263.1Re-query CCDS DB by Nucleotide ID:NM_023774Re-query CCDS DB by Protein ID:NP_076263Link to BLAST:NP_076263.1

Chromosomal Locations for CCDS 40985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 58918883 58919845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTCACACATTCAGAGGCATGATCCAGGCTTTGAGGACCAGCTAGAGGAGGAGGTTCCTGCAGCTGAAG
AGGTAGGCACCTGGGAGAAGGTGGCTGCTGCAGAGAGTTCCCAGGAAACCGCCTCATCCTCTGCTTCCAG
CCAAGCGTCTGCATCAAGCAAAGCAAGTGAGGGTTCTGGTGGTGAAGCAGAGGGAGGTCAGAGTACCTCA
AAGGCCTGCCTCCGCACCAAGTTAATGCTCAACAGTAAGTTTCAGAAGAAGGTTATTGATTTGGTGAAGT
TTCTGAGCTCCAAGTATGTAACAAATGAGCCTGTCACAGAAGCAGAAATTCTGAAGAGTGTTGGGAAGAA
GCACAAGGGCTACTATTCATTGATCTTCAAGCATGCCTGTGAATGCTTGGAAGTGGTCTGTGGCATCGAA
GTAAAGGAAGTGGATGCCCTGAACCACACCTACCTGCTCCTGAAAGTCCTTGACCTCACCTATGATGGGC
GGATCAGCAATGAAGAGGGGATACCCAAGACCGGCCTCCTGGTGCTTGTCCTTGGTATAATCTTCATGGA
AGGCAACCGTGCCTCTGAGAAGAAGATCTGGGAGGTGCTGAATATTGTTGGTGTGTATCCTGACCAACAT
GATTTTATCTGCGGGAATCCCAGAAAGTTCATCACTGAAGATTTGGTGTTAGAGAATTACCTGGTGTACC
AGCCTGTACCCTACAGTGATCCTCCAAGTTATGAGTTCCTGTGGGGTCCAAGGGCCCAAGCTGAAACAAG
CAAAATGAAAGTCCTGCAGTTTTTCTGCAAGGTTGCTGGGAGTAACCCAGCTTCCTTCACCGCTTTGTAT
AAGGAAGCTCTGGAAGATGAAGAGGAGAGAGCCCGAGCTCTACTTGCCTCCACAGCCATTTCTACTGCTG
TGGACAATTCAGGTTCTGGGGACAAGCCCAGCAGTGTCTCCCACTCTGAGTAA

Translation (320 aa):
MSHIQRHDPGFEDQLEEEVPAAEEVGTWEKVAAAESSQETASSSASSQASASSKASEGSGGEAEGGQSTS
KACLRTKLMLNSKFQKKVIDLVKFLSSKYVTNEPVTEAEILKSVGKKHKGYYSLIFKHACECLEVVCGIE
VKEVDALNHTYLLLKVLDLTYDGRISNEEGIPKTGLLVLVLGIIFMEGNRASEKKIWEVLNIVGVYPDQH
DFICGNPRKFITEDLVLENYLVYQPVPYSDPPSYEFLWGPRAQAETSKMKVLQFFCKVAGSNPASFTALY
KEALEDEEERARALLASTAISTAVDNSGSGDKPSSVSHSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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