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Report for CCDS41106.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41106.1 Public Mus musculus X Zfp711 23 108 98 CCDS HistoryNCBI Gene:245595Re-query CCDS DB by CCDS ID:41106.1Re-query CCDS DB by GeneID:245595See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41106.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113409.7 ENSMUSP00000109036.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113409.7Link to Ensembl Protein Viewer:ENSMUSP00000109036.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113409Re-query CCDS DB by Protein ID:ENSMUSP00000109036
Original member NCBI NM_177747.3 NP_808415.2 Updated not alive Link to Nucleotide Sequence:NM_177747.3Link to Protein Sequence:NP_808415.2Re-query CCDS DB by Nucleotide ID:NM_177747Re-query CCDS DB by Protein ID:NP_808415
Current member NCBI NM_177747.4 NP_808415.2 Accepted alive Link to Nucleotide Sequence:NM_177747.4Link to Protein Sequence:NP_808415.2Re-query CCDS DB by Nucleotide ID:NM_177747Re-query CCDS DB by Protein ID:NP_808415Link to BLAST:NP_808415.2

Chromosomal Locations for CCDS 41106.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 112604294 112604372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112614893 112615435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112623952 112624107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112624739 112624876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112627170 112627304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112628104 112628148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112631826 112631969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 112632379 112633556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGGAGTCAGGTGGTGGAAGTCTTGGATTGCACACTTCAGATGCTAGAATGGCTCATACCATGATTATGC
AGGATTTTGTGGCTGGAATGGCTGGTACTGCACATATCGATGGAGACCATATTGTAGTTTCAGTTCCTGA
AGCTGTATTAGTTTCTGATGTTGTCACAGATGATGGGATAACTCTCGATCATGGCCTTGCAGCTGAAGTT
GTCCATGGGCCTGATATTATTACAGAGACTGATGTGGTAACAGAAGGGGTGATTGTTCCTGAAGCTGTGC
TTGAAGCCGATGTTGCCATTGAAGAAGATTTGGAAGAAGATGATGGAGATCATATCTTAACTTCTGAGCT
TATTACAGAAACCGTTAGGGTACCTGAGCAGGTTTTTGTGGCTGATCTTGTTTCTGGTCCTGATGGACAT
TTGGAACATGTGGTCCAAGATTGTGTTTCAGGTGTGGACTCTCCCACAATGGTGTCAGAAGAAGTTCTTG
TAACTAATTCAGATACAGAAACTGTGATTCAAGCAGGTGGTGGTGTTCCTGGTTCTACTGTTACCATAAA
AACGGAAGAAGATGATGATGATGATGTCAAGAGCACTTCCGAAGACTACTTAATGATATCTTTGGATGAT
GTGGGAGAGAAGTTAGAGCATATGGGGAACACGCCATTGAAAATCGCTAGCGATGGTTCACAAGAAGATG
TTAAAGAAGATGCATTTGGTTCAGAAGTGATAAAAGTATATATCTTTAAAGCAGAGGCTGAAGATGATGT
TGAAATAGGTGGGACAGAAATTGTCACAGAGAGTGAATACAGCAGTGGCCATTCTGTAGCTGGAGTGCTT
GACCAGAGCCGAATGCAGCGAGAGAAAATGGTTTACATGGCAGTGAAAGATTCTTCCCAGGAACAGGATG
ATATCAGTAATGCTGATATATCAAATGAACTGTGCATGGAAGTCATTATAGGGGAAGAGGAAGGAACTCC
CCTTGAAATTCCGCTTCAGGACTGTGATGTTAATAAAACAGGTTCCCCTGTTCTCTCTCCTGCATCATAT
GATGAGAGACGAGTTTCTCGAAGGTATGAAGAATGTCAAGCACCAGGAAACACTTTTGACTCAGCATTAG
AAAACAGAAACACTACAGCAGCACAGTACCTTCAAATTTGTGATAGCATGAACACAAATAAAGTTCTTAA
ACAAAAAATCAAGAAGAGGAGAAGGGGAGAAACAAGGCAGTGGCAAACAGCTGTTATAATAGGTCCTGAT
GGACAGCCCTTGACAGTATACCCTTGCCATATTTGCACAAAAAAGTTTAAATCCAGGGGATTCTTAAAAA
GACACATGAAGAATCATCCCGATCATTTGATGAGAAAGAAGTACCAGTGTACAGATTGTGATTTCACAAC
TAACAAGAAAGTGAGTTTCCATAACCACTTAGAAAGCCATAAGCTCATAAACAAGGTTGATAAAACCCAT
GAATTTACAGAATACACTCGAAGATACAGAGAAGCTAGTCCACTGAGTTCAAATAAACTCATTTTAAGAG
ACAAGGAACCGAAGATGCACAAGTGCAAGTACTGTGATTACGAAACTGCCGAACAAGGACTGTTAAATAG
ACATTTGCTGGCTGTTCATAGCAAGAGTTTTCCTCATGTTTGTGTTGAGTGTGGGAAGGGTTTTCGTCAT
CCTTCTGAACTCAAGAAACATATGAGAACCCATACTGGTGAGAAGCCATATCAGTGTCAGTACTGTGCAT
TCAGATGTGCAGATCAATCAAACCTGAAAACGCACATTAAGTCTAAGCATGGTAGCAACTTGCCCTATAA
ATGTGAGCATTGTCCTCAAGCCTTTGGTGATGAGAGAGAGCTTCAGCGCCATCTGGATTTGTTTCAAGGA
CATAAAACACACCAATGTCCTCATTGTGATCATAAGAGCACCAACTCAAGTGACCTTAAGCGGCACATCA
TATCTGTCCATACCAAGGACTTTCCTCACAAATGTGAAGTCTGTGATAAAGGTTTTCATCGTCCTTCAGA
GCTTAAAAAACATAGTGATATTCATAAGGGTAGGAAGATTCACCAGTGTAGGCATTGTGACTTTAAAACC
TCAGATCCATTTATTCTTAGTGGTCATATCCTTTCAGTTCATACTAAAGATCAGTCATTGAAGTGTAAAA
GGTGCAAGAGAGGATTCAGACAACAGAATGAGCTGAAAAAGCACATGAAGACTCATACTGGAAGGAAGAT
TTACCAATGTGAATATTGTGAATACAGCACCACAGATGCATCTGGATTCAAACGACATGTGATTTCAATA
CATACGAAAGACTATCCACACAGGTGTGAATTCTGCAAAAAGGGATTCCGAAGACCATCAGAAAAAAAGC
AGCATATAATGAGGCACCACAAGGAGACTCTTATGTAG

Translation (805 aa):
MESGGGSLGLHTSDARMAHTMIMQDFVAGMAGTAHIDGDHIVVSVPEAVLVSDVVTDDGITLDHGLAAEV
VHGPDIITETDVVTEGVIVPEAVLEADVAIEEDLEEDDGDHILTSELITETVRVPEQVFVADLVSGPDGH
LEHVVQDCVSGVDSPTMVSEEVLVTNSDTETVIQAGGGVPGSTVTIKTEEDDDDDVKSTSEDYLMISLDD
VGEKLEHMGNTPLKIASDGSQEDVKEDAFGSEVIKVYIFKAEAEDDVEIGGTEIVTESEYSSGHSVAGVL
DQSRMQREKMVYMAVKDSSQEQDDISNADISNELCMEVIIGEEEGTPLEIPLQDCDVNKTGSPVLSPASY
DERRVSRRYEECQAPGNTFDSALENRNTTAAQYLQICDSMNTNKVLKQKIKKRRRGETRQWQTAVIIGPD
GQPLTVYPCHICTKKFKSRGFLKRHMKNHPDHLMRKKYQCTDCDFTTNKKVSFHNHLESHKLINKVDKTH
EFTEYTRRYREASPLSSNKLILRDKEPKMHKCKYCDYETAEQGLLNRHLLAVHSKSFPHVCVECGKGFRH
PSELKKHMRTHTGEKPYQCQYCAFRCADQSNLKTHIKSKHGSNLPYKCEHCPQAFGDERELQRHLDLFQG
HKTHQCPHCDHKSTNSSDLKRHIISVHTKDFPHKCEVCDKGFHRPSELKKHSDIHKGRKIHQCRHCDFKT
SDPFILSGHILSVHTKDQSLKCKRCKRGFRQQNELKKHMKTHTGRKIYQCEYCEYSTTDASGFKRHVISI
HTKDYPHRCEFCKKGFRRPSEKKQHIMRHHKETLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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