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Report for CCDS41107.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41107.1 Public Mus musculus X Chm 23 108 98 CCDS HistoryNCBI Gene:12662Re-query CCDS DB by CCDS ID:41107.1Re-query CCDS DB by GeneID:12662See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41107.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026607.14 ENSMUSP00000026607.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026607.14Link to Ensembl Protein Viewer:ENSMUSP00000026607.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026607Re-query CCDS DB by Protein ID:ENSMUSP00000026607
Original member Current member NCBI NM_018818.2 NP_061288.2 Accepted alive Link to Nucleotide Sequence:NM_018818.2Link to Protein Sequence:NP_061288.2Re-query CCDS DB by Nucleotide ID:NM_018818Re-query CCDS DB by Protein ID:NP_061288Link to BLAST:NP_061288.2

Chromosomal Locations for CCDS 41107.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 113043444 113043635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113047336 113047496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113053062 113053160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113064847 113064943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113069579 113069642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113071917 113072021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113080138 113080215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113110176 113110401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113111929 113112049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113112549 113112665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113116016 113116430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113139336 113139460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113140714 113140786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113159504 113159570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 113185441 113185489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGGCGGATAATCTCCCTTCGGACTTTGATGTGATCGTAATAGGGACGGGTCTGCCTGAATCCATCATTG
CAGCTGCATGTTCAAGGAGTGGCCAGAGGGTTCTGCATGTTGATTCAAGAAGCTACTATGGAGGAAACTG
GGCCAGTTTCAGCTTTTCAGGACTGTTGTCCTGGCTAAAGGAATACCAGGAAAATAGTGATGTTGTGACT
GAAAATTCAATGTGGCAAGAACAGATACTTGAAAACGAAGAAGCTATTCTTCTTAGTAGCAAGGACAAAA
CAATTCAACATGTAGAAGTATTTTGTTATGCCAGTCAGGATTTGCACAAAGATGTTGAAGAAGCTGGTGC
ACTGCAGAAAAATCCTGCTTCAGTGATGTCCGCACAGGCCACAGAGGCCGCAGAGGCTGCAGAGGCCGCA
GAGGCTGCAGAGGCCACAGAGGCTGCAGAGGCCGCTTGCCTTCCTACTGCAGAGGAGTCCTTAAGCACGA
GGAGCTGTGAACTACCTGCAGAACAAAGTCAGTGCACGGGGCCAGAGAGTTCACCACAAGTAAATGATGC
TGAAGTAGGAGAGAAAGAAACTCAGAGTGATGCAAAAAGTTCAACAGAACAATCAAGTGAAATTTTGCCT
AAAGTACAAGACAACACAGAGACACCAAAGAGAAATGTAATTACTTACTCACAGATTATTAAAGAAGGCC
GAAGATTTAACATTGATTTAGTATCAAAACTTCTCTATTCTCGGGGATTACTAATTGATCTTCTAATCAA
ATCAAATGTTAGTCGGTATGCAGAGTTTAAAAACATTACGAGGATTCTTGCATTTCGAGAAGGAACTGTG
GAACAGGTCCCCTGTTCCAGAGCAGATGTCTTCAATAGCAAACAACTTACTATGGTAGAAAAGCGAATGC
TTATGAAATTTCTTACATTTTGTGTGGAATATGAAGACCATCCCGATGAGTACAAAGCATACGAGGAAAC
TACATTTTCTGAATACTTAAAAACTCAAAAATTAACCCCCAACCTACAATATTTTGTCCTGCACTCAATT
GCAATGACATCAGAGACAACAAGCAGTACTGTAGATGGTCTCAAAGCTACTAAAAAGTTTCTTCAGTGTC
TTGGGCGGTATGGCAACACTCCATTTCTGTTTCCTTTATATGGCCAAGGAGAACTTCCACAGTGTTTTTG
CAGAATGTGTGCTGTGTTTGGTGGAATCTATTGTCTTCGCCATTCAGTACAGTGCCTTGTAGTGGACAAA
GAATCCAGAAAATGTAAAGCAATTGTAGATCAGTTTGGTCAAAGGATAATCTCTAAACATTTCGTTATTG
AAGACAGTTACCTTTCTGAGAATACATGTTCCGGTGTACAGTACAGGCAAATTTCCAGGGCAGTCCTGAT
TACAGATGGATCAGTACTAAAACCCGATTCTGATCAACAGGTCTCCATTTTGACAGTGCCAGCAGAAGAG
TCAGGAAGTTTTGCTGTTCGAGTCATTGAGTTATGCTCTTCAACAATGACATGCATGAAAGGCACATACT
TGGTACATTTGACTTGCATGTCTTCTAAAACAGCAAGAGAAGATTTAGAACGAGTAGTCCAGAAATTGTT
TACTCCATATACAGAAATCGAAGCAGAAAATGAACAGGTTGAAAAGCCAAGAATTCTATGGGCACTCTAC
TTCAATATGAGAGACTCTTCGGATATCAGCAGAGATTGTTATAATGATTTACCGTCCAATGTCTATGTGT
GCTCTGGCCCTGACTGTAATCTAGGAAATGATAATGCAGTCCAACAGGCGGAAACAGTTTTCCAGAAAAT
CTGCCCAAATGAAGACTTCTGTCCAGCCCCACCAAATCCTGAAGATATTATTCTTGATGGAGACAGCTCA
CAACAAGAAGTTTCAGAATCCAGTGTCATACCAGAAACCAACTCAGAAACTCCCAAGGAAAGTACAGTCC
TAGGAGACTCAGAAGAGCCCTCTGAATAG

Translation (662 aa):
MADNLPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENSDVVT
ENSMWQEQILENEEAILLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNPASVMSAQATEAAEAAEAA
EAAEATEAAEAACLPTAEESLSTRSCELPAEQSQCTGPESSPQVNDAEVGEKETQSDAKSSTEQSSEILP
KVQDNTETPKRNVITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTV
EQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEDHPDEYKAYEETTFSEYLKTQKLTPNLQYFVLHSI
AMTSETTSSTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDK
ESRKCKAIVDQFGQRIISKHFVIEDSYLSENTCSGVQYRQISRAVLITDGSVLKPDSDQQVSILTVPAEE
SGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDLERVVQKLFTPYTEIEAENEQVEKPRILWALY
FNMRDSSDISRDCYNDLPSNVYVCSGPDCNLGNDNAVQQAETVFQKICPNEDFCPAPPNPEDIILDGDSS
QQEVSESSVIPETNSETPKESTVLGDSEEPSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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