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Report for CCDS41151.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41151.1 Public Mus musculus X Mid2 23 108 98 CCDS HistoryNCBI Gene:23947Re-query CCDS DB by CCDS ID:41151.1Re-query CCDS DB by GeneID:23947See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41151.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112993.1 ENSMUSP00000108617.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112993.1Link to Ensembl Protein Viewer:ENSMUSP00000108617.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112993Re-query CCDS DB by Protein ID:ENSMUSP00000108617
Original member NCBI NM_011845.3 NP_035975.1 Updated not alive Link to Nucleotide Sequence:NM_011845.3Link to Protein Sequence:NP_035975.1Re-query CCDS DB by Nucleotide ID:NM_011845Re-query CCDS DB by Protein ID:NP_035975
Current member NCBI NM_011845.4 NP_035975.1 Accepted alive Link to Nucleotide Sequence:NM_011845.4Link to Protein Sequence:NP_035975.1Re-query CCDS DB by Nucleotide ID:NM_011845Re-query CCDS DB by Protein ID:NP_035975Link to BLAST:NP_035975.1

Chromosomal Locations for CCDS 41151.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 140678052 140678711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140693067 140693162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140736435 140736542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140738320 140738468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140749572 140749699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140750822 140750965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140761185 140761346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140762915 140763122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 140763479 140763881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGGAAACACTGGAGTCAGAATTGACCTGTCCAATCTGCCTCGAGTTGTTTGAAGACCCCCTTCTGCTTC
CTTGTGCTCACAGCCTATGTTTTAGCTGTGCCCACCGCATCTTGGTCTCAAGCTGCAGCTCTGGTGAATC
CATTGAACCCATTACTGCTTTCCAGTGTCCTACATGCAGGTATGTTATCTCGCTGAATCACCGGGGCCTG
GATGGCCTCAAGAGGAATGTGACCCTGCAGAACATTATTGATCGCTTCCAGAAGGCTTCAGTCAGTGGGC
CCAATTCTCCAAGTGAGAGCCGCCGGGAGAGGACTTACAGGCCTAGCTCCGCCATGTCGAGTGAGAGAAT
TGCATGTCAATTCTGTGAGCAGGACCCTCCGAGAGATGCTGTAAAGACGTGCATCACCTGTGAGGTCTCC
TACTGTGACCGTTGCCTTCGGGCCACACACCCCAACAAGAAACCTTTCACCAGCCATCGCCTGGTGGAAC
CAGTTTCAGACACACATCTTCGAGGGATTACCTGCCTGGACCACGAGAATGAGAAGGTGAACATGTACTG
TGTATCTGATGATCAATTGATCTGTGCCTTATGCAAACTGGTGGGTCGTCACCGAGACCATCAGGTCGCT
TCTCTGAATGATCGATTTGAGAAACTAAAGCAAACTCTCGAGATGAACCTCACCAACCTGGTTAAGCGCA
ACAGTGAACTAGAAAATCAAATGGCCAAACTAATACAGATCTGCCAGCAAGTTGAGGTGAATACTGCTAT
GCATGAGGCAAAACTTATGGAAGAATGTGACGAGTTGGTAGAGATCATCCAGCAGAGGAAACAAATGATT
GCTGTCAAAATCAAAGAGACAAAGGTTATGAAACTGAGAAAGTTGGCACAGCAGGTTGCTAATTGCCGCC
AGTGTCTTGAGCGGTCAACAGTCCTCATCAACCAAGCTGAGCATATCCTAAAGGAAAATGACCAAGCACG
GTTTCTGCAGTCTGCAAAAAACATTGCCGAGAGGGTCGCTATGGCAACTGCATCTTCGCAAGTTCTGATT
CCAGACATCAATTTTAATGATGCCTTTGAAAACTTTGCTTTAGATTTTTCTAGAGAAAAGAAACTATTGG
AGGGGCTAGACTATTTAACAGCTCCAAACCCACCATCTATCCGAGAAGAGCTCTGTACTGCTTCCCATGA
CACCATTACAGTCCACTGGATCTCAGACGACGAATTCAGCATCAGCTCCTATGAGCTTCAGTACACCATA
TTCACTGGCCAGGCTAACTTCATCAGCCTGTACAATTCAGTGGATAGCTGGATGATTGTGCCCAACATTA
AGCAGAACCATTACACAGTTCATGGACTCCAGAGTGGGACACGCTACATCTTTATCGTGAAAGCCATAAA
TCAAGCAGGCAGCCGGAACAGCGAACCCACCAGACTAAAAACGAACAGCCAACCATTTAAACTAGATCCC
AAAATGACTCACAAGAAGTTGAAGATCTCCAATGATGGATTGCAGATGGAGAAGGATGAGAGCTCTCTGA
AGAAGAGCCACACTCCGGAGAGATTTAGTGGCACAGGGTGTTATGGGGCAGCAGGAAATATATTCATCGA
CAGTGGCTGCCACTACTGGGAGGTGGTCATGGGTTCTTCAACATGGTATGCTATTGGTATTGCCTACAAA
TCAGCTCCAAAGAATGAGTGGATTGGCAAGAATGCCTCTTCCTGGGTCTTCTCTCGATGCAACAGTAACT
TCGTGGTTCGGCACAACAACAAGGAAATGCTGGTGGATGTGCCCCCACAGTTGAAGCGTCTAGGTGTCCT
TCTGGATTATGACAACAACATGCTGTCTTTCTATGACCCAGCTAACTCTCTCCATCTTCATACTTTTGAT
GTTACCTTCATTCTTCCAGTTTGTCCAACATTCACAATCTGGAACAAATCCCTAATGATTCTTTCTGGCT
TGCCTGCCCCTGATTTTATTGATTATCCTGAGCGGCAGGAATGCAACTGCAGGCCTCAAGAATCCCCTTA
TGTGTCAGGGATGAAAGCTTGCCATTAA

Translation (685 aa):
METLESELTCPICLELFEDPLLLPCAHSLCFSCAHRILVSSCSSGESIEPITAFQCPTCRYVISLNHRGL
DGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPSSAMSSERIACQFCEQDPPRDAVKTCITCEVS
YCDRCLRATHPNKKPFTSHRLVEPVSDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVA
SLNDRFEKLKQTLEMNLTNLVKRNSELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMI
AVKIKETKVMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQVLI
PDINFNDAFENFALDFSREKKLLEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTI
FTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKTNSQPFKLDP
KMTHKKLKISNDGLQMEKDESSLKKSHTPERFSGTGCYGAAGNIFIDSGCHYWEVVMGSSTWYAIGIAYK
SAPKNEWIGKNASSWVFSRCNSNFVVRHNNKEMLVDVPPQLKRLGVLLDYDNNMLSFYDPANSLHLHTFD
VTFILPVCPTFTIWNKSLMILSGLPAPDFIDYPERQECNCRPQESPYVSGMKACH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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