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Report for CCDS41212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41212.1 Public Mus musculus X Arhgap6 23 108 98 CCDS HistoryNCBI Gene:11856Re-query CCDS DB by CCDS ID:41212.1Re-query CCDS DB by GeneID:11856See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112131.8 ENSMUSP00000107759.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112131.8Link to Ensembl Protein Viewer:ENSMUSP00000107759.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112131Re-query CCDS DB by Protein ID:ENSMUSP00000107759
Original member Current member NCBI NM_178754.3 NP_848869.1 Accepted alive Link to Nucleotide Sequence:NM_178754.3Link to Protein Sequence:NP_848869.1Re-query CCDS DB by Nucleotide ID:NM_178754Re-query CCDS DB by Protein ID:NP_848869Link to BLAST:NP_848869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848869.1 805 O54834-3 805 100% 0 0

Chromosomal Locations for CCDS 41212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 169036822 169036866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169220198 169220357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169237490 169237561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169246522 169246781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169248516 169248711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169253578 169253633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169256486 169256636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169257652 169257800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169265423 169265602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169281961 169282058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169300063 169300337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169301756 169301836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169302317 169303011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2418 nt):
ATGGGGGACCCGTCCTACAGCGAGAAACCCCGTCTGCACTACGCGGGTGACTTCACCTGGAACAGCATGT
CTGGTCGTAGCGTGCGCCTGAGGTCAGTCCCCATCCAGAGCCTCTCAGAGCTGGAGCGGGCACGACTGCA
GGAAGTGGCTTTTTATCAGTTGCAGCAGGACTGTGACCTGGGCTGTCAGATCACCATCCCCAAAGATGGA
CAAAAGAGAAAGAAATCTTTGAGAAAGAAACTGGATTCACTAGGGAAGGAAAAGAACAAAGACAAAGAAT
TCATCCCACAGGCATTTGGAATGCCCTTATCCCAAGTCATTGCTAATGACCGGGCATATAAACTGAAGCA
AGACTTGCAGAGGGAGGAGCAGAAGGATGCATCATCGGATTTTGTGTCTTCCCTCCTCCCATTTGGGAAT
AAAAAACAAAACAAAGAACTCTCAAGCAGTAACTCATCTCTCAGCTCAACCTCAGAAACACCAAATGAGT
CTACATCACCGAATACTCCAGAACCAGCTCCTCGGGCCAGGAGAAGGGGCGCCATGTCCGTGGATTCCAT
CACTGATCTGGATGACAACCAGTCTCGACTCCTAGAAGCTTTACAACTCTCCTTGCCTGCTGAGGCTCAG
AGTAAAAAAGAAAAGGCCAGAGATAAGAAGCTGAGTCTGAATCCTATTTACAGGCAGGTCCCCAGGCTGG
TGGACAGCTGCTGTCAACATCTGGAAAAACATGGCCTCCAGACAGTGGGGATATTCCGAGTTGGAAGCTC
AAAGAAGAGAGTAAGACAATTGCGTGAAGAATTTGACCGTGGGGTTGATGTCTGTCTGGAAGAGGAGCAT
AGTGTTCACGATGTGGCAGCCTTGTTAAAGGAGTTCCTTAGAGACATGCCTGACCCCCTTCTCACAAGGG
AGCTATACACTGCATTTATCAACACTCTCCTGTTGGAGCCTGAGGAACAACTGGGCACCTTGCAACTCCT
CATTTACCTTCTACCTCCCTGCAACTGCGACACCCTCCACCGCCTCCTACAGTTCCTCTCCATTGTGGCC
AGGCATGCTGATGATAATGTCAGCAAAGATGGACAAGAGGTTACTGGGAACAAAATGACATCTCTGAACT
TAGCCACTATATTTGGACCCAACCTGCTCCACAAGCAGAAGTCATCAGACAAAGAATATTCTGTTCAGAG
CTCAGCCAGAGCTGAGGAGAGCACAGCCATCATAGCTGTGGTACAGAAGATGATTGAAAATTATGAAGCC
TTGTTCATGGTTCCCCCAGATCTCCAGAATGAAGTGCTGATCAGCCTTCTAGAGACAGATCCAGATGTTG
TGGACTACTTGCTCAGAAGAAAGGCTTCCCAATCCTCGAGCCCTGACATACTTCAGACGGAAGTTTCCTT
TTCCATGGGAGGGAGGCATTCATCTACAGATTCCAACAAAGCCTCCAGTGGAGACATCTCCCCTTATGAC
AACAACTCCCCAGTATTGTCTGAGCGCTCCCTGCTGGCTATGCAAGAGGACAGGGCCCGGGGGGGCTCGG
AGAAGCTTTATAAAGTGCCAGAGCAGTATACACTGGTGGGCCACTTGTCATCGCCAAAGTCAAAGTCAAG
AGAAAGTTCTCCTGGACCAAGGCTTGGAAAAGAAATGTCAGAGGAGCCTTTCAATATCTGGGGAACTTGG
CATTCAACATTAAAAAGTGGATCCAAAGACCCAGGAATGACAGGCTCTTATGGCGACATTTTTGAAAGCA
GCTCCCTCCGACCGAGGCCTTGTTCTCTTTCTCAAGGGAACCTTTCCCTGAACTGGCCTCGGTGTCAAGG
GAGCCCGACAGGGCTGGACAGTGGCACTCAGGTAATTCGGAGGACTCAGACGGCGGCCACCGTGGAGCAG
TGCAGTGTCCACCTTCCGGTGTCACGTGTCTGCAGCACTCCCCACATCCAGGACGGCAGCAGGGGGACCA
GGCGGCCTGCAGCCAGCTCTGATCCATTTTTGTCCCTAAACAGCACAGAAGATCTAGCTGAGGGCAAGGA
GGATGTTGCCTGGCTGCAAAGCCAGGCCCGACCTGTGTACCAGAGACCTCAGGAGAGTGGAAAAGATGAC
AGGCGCCCCCCTCCTCCTTACCCGGGGTCAGGGAAGCCTGCCACAACCTCTGCCCAGCTGCCACTAGAGC
CTCCCCTGTGGAGGCTCCAGAGGCATGAAGAAGGTTCAGAAACAGCTGTGGAAGGAGGCCAGCAGGCCTC
AGGGGAGCATCAGACCAGGCCAAAAAAACTGAGCAGCGCCTACTCCCTCTCAGCCAGCGAGCAGGACAAA
CAGAACTTAGGGGAAGCCAGCTGGCTCGACTGGCAGCGAGAGCGGTGGCAGATCTGGGAGCTTCTATCAA
CTGATAACCCCGACGCCCTCCCGGAAACCCTAGTATAA

Translation (805 aa):
MGDPSYSEKPRLHYAGDFTWNSMSGRSVRLRSVPIQSLSELERARLQEVAFYQLQQDCDLGCQITIPKDG
QKRKKSLRKKLDSLGKEKNKDKEFIPQAFGMPLSQVIANDRAYKLKQDLQREEQKDASSDFVSSLLPFGN
KKQNKELSSSNSSLSSTSETPNESTSPNTPEPAPRARRRGAMSVDSITDLDDNQSRLLEALQLSLPAEAQ
SKKEKARDKKLSLNPIYRQVPRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGVDVCLEEEH
SVHDVAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQFLSIVA
RHADDNVSKDGQEVTGNKMTSLNLATIFGPNLLHKQKSSDKEYSVQSSARAEESTAIIAVVQKMIENYEA
LFMVPPDLQNEVLISLLETDPDVVDYLLRRKASQSSSPDILQTEVSFSMGGRHSSTDSNKASSGDISPYD
NNSPVLSERSLLAMQEDRARGGSEKLYKVPEQYTLVGHLSSPKSKSRESSPGPRLGKEMSEEPFNIWGTW
HSTLKSGSKDPGMTGSYGDIFESSSLRPRPCSLSQGNLSLNWPRCQGSPTGLDSGTQVIRRTQTAATVEQ
CSVHLPVSRVCSTPHIQDGSRGTRRPAASSDPFLSLNSTEDLAEGKEDVAWLQSQARPVYQRPQESGKDD
RRPPPPYPGSGKPATTSAQLPLEPPLWRLQRHEEGSETAVEGGQQASGEHQTRPKKLSSAYSLSASEQDK
QNLGEASWLDWQRERWQIWELLSTDNPDALPETLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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