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Report for CCDS41521.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41521.1 Public Homo sapiens 10 C10orf53 24 110 108 CCDS HistoryNCBI Gene:282966Re-query CCDS DB by CCDS ID:41521.1Re-query CCDS DB by GeneID:282966See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41521.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374111.8 ENSP00000363225.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374111.8Link to Ensembl Protein Viewer:ENSP00000363225.3Re-query CCDS DB by Nucleotide ID:ENST00000374111Re-query CCDS DB by Protein ID:ENSP00000363225
Original member Current member NCBI NM_001042427.3 NP_001035892.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042427.3Link to Protein Sequence:NP_001035892.1Re-query CCDS DB by Nucleotide ID:NM_001042427Re-query CCDS DB by Protein ID:NP_001035892Link to BLAST:NP_001035892.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035892.1 93 Q8N6V4-1 93 100% 0 0

Chromosomal Locations for CCDS 41521.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 49679698 49679794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49693774 49693893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 49694538 49694602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGCCCAAGAACGCAGTGGTCATCCTGCGCTATGGGCCCTACAGCGCGGCAGGCCTACCGGTGGAGCACC
ACACCTTCCGCCTGCAGGGCCTGCAAGCTGTGTTGGCCATAGATGGACATGAGGTCATCCTAGAGAAGAT
AGAAGACTGGAATGTGGTGGAACTCATGGTGAATGAAGAAGTCATCTTCCACTGCAACATTAAGGACTTG
GAGTTCGGAGGCGATGGTAAACTAGACCCACTGTGTGAAAAGGCCAGGATAGCCGTGCTGAATGCCTACT
GA

Translation (93 aa):
MPKNAVVILRYGPYSAAGLPVEHHTFRLQGLQAVLAIDGHEVILEKIEDWNVVELMVNEEVIFHCNIKDL
EFGGDGKLDPLCEKARIAVLNAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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