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Report for CCDS41534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41534.1 Public Homo sapiens 10 RUFY2 24 110 108 CCDS HistoryNCBI Gene:55680Re-query CCDS DB by CCDS ID:41534.1Re-query CCDS DB by GeneID:55680See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 41534.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388768.6 ENSP00000373420.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000388768.6Link to Ensembl Protein Viewer:ENSP00000373420.2Re-query CCDS DB by Nucleotide ID:ENST00000388768Re-query CCDS DB by Protein ID:ENSP00000373420
Original member Current member NCBI NM_017987.5 NP_060457.4 Accepted alive Link to Nucleotide Sequence:NM_017987.5Link to Protein Sequence:NP_060457.4Re-query CCDS DB by Nucleotide ID:NM_017987Re-query CCDS DB by Protein ID:NP_060457Link to BLAST:NP_060457.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060457.4 641 Q8WXA3-3 641 100% 0 0

Chromosomal Locations for CCDS 41534.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68345768 68345911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68346007 68346084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68355353 68355401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68363590 68363684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68363984 68364113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68376853 68376972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68379424 68379521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68381232 68381399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68383798 68383914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68384051 68384152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68386059 68386128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68393138 68393203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68394075 68394136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68394328 68394451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68396780 68396881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68401620 68401737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68404671 68404844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68406754 68406862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGACTTTTCAGGTTTGGGGGTGGCGGAGGGAAGACGCATCTCAGGTTTTGGCCTGGGTGCCTGACGCCG
AGGGCGGGAGACGGGGAATGCTGACGCGCAGGAGCCTGGCTACAAAAGACCCCACAGCTGTAGAGAGAGC
AAACTTGTTAAACATGGCTAAACTGAGTATCAAAGGACTCATTGAATCTGCTCTGAGCTTTGGCCGCACT
TTGGATTCTGACTATCCCCCCTTGCAGCAATTCTTTGTTGTTATGGAACATTGCCTGAAACACGGTCTTA
AAGTAAGAAAATCATTTTTGAGTTACAACAAAACCATCTGGGGCCCTTTGGAACTGGTGGAGAAGCTGTA
CCCCGAAGCAGAGGAAATAGGAGCTAGTGTCCGGGATCTACCTGGTCTGAAGACCCCTCTGGGTCGAGCA
AGAGCGTGGCTTCGATTAGCCCTCATGCAAAAAAAAATGGCCGATTACTTACGTTGCTTAATTATTCAGA
GGGATCTCTTGAGTGAGTTTTATGAGTATCACGCACTAATGATGGAAGAAGAAGGAGCAGTAATTGTTGG
GCTGCTGGTTGGCCTGAATGTGATCGATGCTAATCTGTGTGTGAAGGGAGAGGATTTAGACTCACAAGTT
GGAGTGATTGATTTTTCTATGTATTTAAAGAATGAAGAAGATATTGGAAATAAAGAAAGGAATGTTCAAA
TTGCTGCCATATTAGACCAAAAGAATTATGTTGAAGAATTAAATAGACAACTGAACAGCACAGTCAGCAG
CCTCCATTCAAGAGTTGATTCATTAGAAAAGTCAAATACTAAGCTGATTGAAGAGTTAGCAATAGCAAAG
AATAACATCATTAAACTCCAGGAAGAAAATCATCAATTACGAAGTGAAAATAAATTGATTTTAATGAAAA
CACAGCAGCACCTAGAGGTTACCAAAGTAGATGTGGAAACTGAGCTTCAAACATATAAGCATTCTCGTCA
GGGGCTAGATGAAATGTACAATGAAGCCAGAAGGCAGCTTCGAGATGAATCTCAGTTACGACAGGATGTA
GAGAATGAGCTAGCAGTACAAGTTAGTATGAAGCATGAGATTGAACTTGCCATGAAGTTGCTGGAGAAAG
ATATCCATGAGAAACAAGATACTCTGATAGGCCTTCGACAACAACTAGAGGAAGTTAAAGCAATTAACAT
AGAGATGTATCAAAAGTTGCAGGGTTCTGAAGATGGCTTGAAAGAAAAAAATGAAATAATTGCCCGACTA
GAAGAAAAAACCAATAAAATTACTGCAGCCATGAGGCAGCTGGAACAAAGATTGCAGCAAGCAGAGAAGG
CGCAAATGGAAGCTGAAGATGAGGATGAGAAATATCTACAAGAATGTCTCAGTAAATCTGATAGTCTGCA
GAAACAAATCTCCCAAAAGGAGAAACAGCTGGTGCAACTGGAAACTGACTTGAAGATTGAGAAGGAATGG
AGGCAGACTTTGCAGGAAGATCTTCAAAAGGAGAAAGATGCCTTATCTCATCTTAGAAATGAGACTCAAC
AAATCATTAGTCTTAAAAAAGAGTTCCTTAACCTCCAGGATGAAAATCAGCAGTTGAAAAAAATATATCA
TGAACAAGAGCAAGCTCTTCAAGAACTCGGCAACAAGCTTAGCGAATCAAAACTTAAAATTGAAGACATA
AAAGAAGCCAACAAAGCATTGCAGGGACTGGTTTGGCTGAAAGACAAAGAAGCAACACATTGTAAACTTT
GTGAAAAGGAATTCTCACTCTCTAAGAGAAAGCACCACTGTAGAAATTGTGGGGAAATTTTCTGTAATGC
CTGCTCTGACAACGAACTACCTTTGCCTTCTTCACCAAAACCAGTACGGGTTTGTGATTCCTGTCATGCA
CTGCTCATTCAGAGATGCTCATCTAACTTGCCCTGA

Translation (641 aa):
MTFQVWGWRREDASQVLAWVPDAEGGRRGMLTRRSLATKDPTAVERANLLNMAKLSIKGLIESALSFGRT
LDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEEIGASVRDLPGLKTPLGRA
RAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEEGAVIVGLLVGLNVIDANLCVKGEDLDSQV
GVIDFSMYLKNEEDIGNKERNVQIAAILDQKNYVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAK
NNIIKLQEENHQLRSENKLILMKTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDV
ENELAVQVSMKHEIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARL
EEKTNKITAAMRQLEQRLQQAEKAQMEAEDEDEKYLQECLSKSDSLQKQISQKEKQLVQLETDLKIEKEW
RQTLQEDLQKEKDALSHLRNETQQIISLKKEFLNLQDENQQLKKIYHEQEQALQELGNKLSESKLKIEDI
KEANKALQGLVWLKDKEATHCKLCEKEFSLSKRKHHCRNCGEIFCNACSDNELPLPSSPKPVRVCDSCHA
LLIQRCSSNLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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