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Report for CCDS41785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41785.1 Public Homo sapiens 12 KRT86 24 110 108 CCDS HistoryNCBI Gene:3892Re-query CCDS DB by CCDS ID:41785.1Re-query CCDS DB by GeneID:3892See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41785.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293525.5 ENSP00000293525.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000293525.5Link to Ensembl Protein Viewer:ENSP00000293525.5Re-query CCDS DB by Nucleotide ID:ENST00000293525Re-query CCDS DB by Protein ID:ENSP00000293525
Original member Current member EBI ENST00000423955.7 ENSP00000444533.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000423955.7Link to Ensembl Protein Viewer:ENSP00000444533.1Re-query CCDS DB by Nucleotide ID:ENST00000423955Re-query CCDS DB by Protein ID:ENSP00000444533
Original member Current member NCBI NM_001320198.2 NP_001307127.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320198.2Link to Protein Sequence:NP_001307127.1Re-query CCDS DB by Nucleotide ID:NM_001320198Re-query CCDS DB by Protein ID:NP_001307127Link to BLAST:NP_001307127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307127.1 486 O43790 486 100% 0 0

Chromosomal Locations for CCDS 41785.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52301917 52302285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52303100 52303308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52304111 52304171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52304932 52305027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52305240 52305404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52305663 52305788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52306060 52306280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52308233 52308264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52308404 52308585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGACTTGTGGATCTTACTGTGGTGGCCGCGCCTTCAGCTGCATCTCGGCCTGCGGGCCCCGGCCCGGCC
GCTGCTGCATCACCGCCGCCCCCTACCGTGGCATCTCCTGCTACCGCGGCCTCACCGGGGGCTTCGGCAG
CCACAGCGTGTGCGGAGGCTTTCGGGCCGGCTCCTGCGGACGCAGCTTCGGCTACCGCTCCGGGGGCGTG
TGCGGGCCCAGTCCCCCATGCATCACCACCGTGTCGGTCAACGAGAGCCTCCTCACGCCCCTCAACCTGG
AGATCGACCCCAACGCGCAGTGCGTGAAGCAGGAGGAGAAGGAGCAGATCAAGTCCCTCAACAGCAGGTT
CGCGGCCTTCATCGACAAGGTGCGCTTCCTGGAGCAGCAGAACAAACTGCTGGAGACAAAGCTGCAGTTC
TACCAGAACCGCGAGTGTTGCCAGAGCAACCTGGAGCCCCTGTTTGAGGGCTACATCGAGACTCTGCGGC
GGGAGGCCGAGTGCGTGGAGGCCGACAGCGGGAGGCTGGCCTCAGAGCTTAACCACGTGCAGGAGGTGCT
GGAGGGCTACAAGAAGAAGTATGAGGAGGAGGTTTCTCTGAGAGCAACAGCTGAGAACGAGTTTGTGGCT
CTGAAGAAGGATGTGGACTGCGCCTACCTCCGCAAATCAGACCTGGAGGCCAATGTGGAGGCCCTGATCC
AGGAGATCGACTTCCTGAGGCGGCTGTATGAGGAGGAGATCCGCGTTCTCCAGTCCCACATCTCAGACAC
CTCCGTGGTTGTCAAGCTGGACAACAGCCGGGACCTGAACATGGACTGCATCATTGCCGAGATCAAGGCA
CAGTACGATGACATTGTCACCCGTAGCCGGGCTGAGGCCGAGTCCTGGTACCGCAGCAAGTGTGAGGAGA
TGAAGGCCACGGTGATCAGGCACGGGGAGACCCTGCGCCGCACCAAGGAGGAGATCAACGAGCTGAACCG
CATGATCCAGAGGCTGACGGCTGAGGTGGAGAATGCCAAGTGCCAGAATTCCAAGCTGGAGGCTGCGGTG
GCTCAGTCTGAGCAGCAGGGTGAGGCGGCCCTCAGCGATGCCCGCTGCAAGTTGGCCGAGCTGGAGGGTG
CCCTGCAGAAGGCCAAGCAGGACATGGCCTGCCTGATCAGGGAGTACCAGGAGGTGATGAACTCCAAGCT
GGGCCTGGACATCGAGATCGCCACCTACAGGCGCCTGCTGGAGGGCGAGGAGCAGAGGCTGTGCGAGGGC
GTCGGCTCGGTGAATGTCTGCGTCAGCAGCTCCCGCGGTGGCGTTGTCTGTGGCGATCTCTGCGCCTCCA
CTACTGCCCCTGTTGTCTCCACCAGAGTCAGTAGCGTCCCCAGCAACAGCAACGTGGTGGTGGGCACTAC
TAACGCCTGCGCCCCCTCCGCCCGGGTTGGCGTCTGCGGCGGCAGCTGTAAGAGGTGCTAG

Translation (486 aa):
MTCGSYCGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGSCGRSFGYRSGGV
CGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNSRFAAFIDKVRFLEQQNKLLETKLQF
YQNRECCQSNLEPLFEGYIETLRREAECVEADSGRLASELNHVQEVLEGYKKKYEEEVSLRATAENEFVA
LKKDVDCAYLRKSDLEANVEALIQEIDFLRRLYEEEIRVLQSHISDTSVVVKLDNSRDLNMDCIIAEIKA
QYDDIVTRSRAEAESWYRSKCEEMKATVIRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAV
AQSEQQGEAALSDARCKLAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEG
VGSVNVCVSSSRGGVVCGDLCASTTAPVVSTRVSSVPSNSNVVVGTTNACAPSARVGVCGGSCKRC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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