NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS41938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41938.1 Public Homo sapiens 14 STRN3 24 110 108 CCDS HistoryNCBI Gene:29966Re-query CCDS DB by CCDS ID:41938.1Re-query CCDS DB by GeneID:29966See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41938.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357479.10 ENSP00000350071.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357479.10Link to Ensembl Protein Viewer:ENSP00000350071.5Re-query CCDS DB by Nucleotide ID:ENST00000357479Re-query CCDS DB by Protein ID:ENSP00000350071
Original member Current member NCBI NM_001083893.2 NP_001077362.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001083893.2Link to Protein Sequence:NP_001077362.1Re-query CCDS DB by Nucleotide ID:NM_001083893Re-query CCDS DB by Protein ID:NP_001077362Link to BLAST:NP_001077362.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077362.1 797 Q13033-1 797 100% 0 0

Chromosomal Locations for CCDS 41938.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 30895411 30895580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30895662 30895748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30902536 30902643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30905418 30905558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30906877 30907044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30911041 30911162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30911777 30911824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30912007 30912182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30913524 30913657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30918966 30919106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30929201 30929311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30935163 30935304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30936495 30936624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30947090 30947263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30950863 30950944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30955620 30955693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 30956139 30956242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31025904 31026185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2394 nt):
ATGGACGAGCTTGCCGGAGGCGGTGGTGGCGGCCCGGGGATGGCGGCCCCTCCCCGGCAGCAGCAGGGAC
CTGGGGGGAACCTGGGCCTTTCGCCCGGGGGGAACGGAGCGGCGGGCGGCGGGGGTCCTCCGGCCTCCGA
GGGAGCGGGTCCCGCGGCAGGCCCCGAGCTGTCCCGGCCGCAGCAGTACACTATCCCGGGGATACTGCAC
TACATCCAGCACGAGTGGGCTCGGTTCGAGATGGAGCGGGCGCACTGGGAGGTGGAACGGGCCGAACTGC
AGGCCCGGATTGCATTTCTACAAGGCGAAAGAAAAGGTCAAGAGAACCTGAAGAAGGACTTAGTAAGAAG
AATAAAGATGTTAGAGTATGCATTAAAACAAGAAAGGGCAAAATATCACAAATTAAAATATGGCACGGAA
CTGAACCAAGGTGACTTGAAAATGCCAACCTTTGAGTCAGAAGAAACCAAAGACACAGAGGCTCCCACAG
CACCTCAGAATAGCCAGTTAACGTGGAAGCAAGGCAGACAGCTTTTAAGACAGTATCTTCAGGAAGTAGG
TTATACAGATACAATATTAGATGTACGGTCTCAGCGGGTAAGGTCATTACTTGGACTATCTAATTCAGAA
CCAAATGGATCAGTAGAAACAAAGAATTTAGAACAGATCCTGAATGGAGGTGAATCTCCTAAGCAAAAGG
GACAAGAAATAAAAAGGTCCTCTGGTGATGTTCTTGAGACGTTCAATTTCTTAGAAAATGCCGATGACAG
TGATGAAGATGAGGAAAATGACATGATCGAAGGCATCCCAGAAGGAAAAGACAAACATCGGATGAATAAA
CATAAAATAGGTAATGAAGGTTTAGCTGCTGACCTAACTGACGATCCTGATACTGAGGAAGCACTGAAAG
AATTTGATTTTTTAGTGACTGCTGAAGATGGTGAAGGAGCTGGAGAAGCACGGAGTTCGGGGGATGGCAC
AGAATGGGATAAAGATGACCTCTCCCCAACTGCTGAGGTTTGGGATGTAGACCAGGGACTAATAAGTAAA
CTGAAGGAACAGTACAAGAAGGAACGAAAGGGGAAGAAAGGGGTGAAGAGGGCCAACAGGACAAAACTCT
ACGACATGATAGCTGATCTGGGAGATGATGAGCTGCCCCACATCCCTTCAGGAATCATTAATCAGTCTAG
GTCAGCCTCTACTAGAATGACTGATCATGAAGGTGCAAGAGCAGAGGAAGCTGAACCAATAACGTTTCCA
TCTGGAGGAGGCAAGTCATTTATTATGGGTTCTGATGATGTTTTGTTAAGTGTACTGGGCCTTGGAGACC
TTGCAGACTTGACGGTAACAAATGATGCAGACTATAGTTATGATTTGCCTGCTAATAAAGATGCCTTTCG
AAAGACATGGAATCCCAAGTATACACTACGTAGCCATTTTGATGGAGTACGGGCATTAGCTTTTCATCCT
GTAGAACCTGTGCTGGTTACTGCTTCTGAGGACCATACCCTGAAACTTTGGAACCTGCAAAAAACAGTTC
CTGCCAAAAAGAGTGCCTCTTTAGATGTAGAGCCTATCTACACATTTAGGGCCCACATCGGCCCTGTTCT
GTCATTAGCTATTAGTTCTAATGGAGAACAGTGTTTTAGTGGTGGTATTGATGCAACCATCCAGTGGTGG
AATATGCCGAGTCCCAGTGTAGATCCATATGATACATATGAGCCAAATGTTCTAGCTGGCACTTTAGTTG
GTCATACAGATGCAGTTTGGGGTCTTGCTTATAGTGGCATAAAAAATCAATTACTGTCTTGTTCAGCAGA
TGGCACTGTTAGGTTATGGAATCCACAAGAAAAATTGCCATGTATTTGCACTTACAATGGAGATAAAAAG
CATGGAATACCTACATCAGTTGACTTTATAGGCTGTGATCCAGCTCATATGGTAACCTCTTTCAACACTG
GTAGTGCAGTAATTTATGATTTAGAAACATCACAGTCATTGGTGATACTTTCATCACAGGTAGATTCTGG
TTTACAATCTAATAATCATATCAACAGAGTAGTAAGTCATCCCACACTTCCTGTTACAATAACTGCTCAT
GAAGATAGACACATCAAATTTTTTGACAATAAAACGGGTAAAATGATCCATTCTATGGTAGCTCACTTGG
ATGCTGTTACAAGTCTAGCAGTAGATCCTAATGGAATCTATTTGATGTCTGGAAGCCATGACTGTTCCAT
CAGATTATGGAATTTAGACAGCAAGACATGTGTGCAAGAAATAACAGCTCACAGAAAGAAATTGGATGAA
TCAATTTATGATGTTGCTTTCCACTCGTCAAAAGCATATATAGCTAGTGCAGGAGCTGATGCTCTTGCCA
AAGTATTTGTATGA

Translation (797 aa):
MDELAGGGGGGPGMAAPPRQQQGPGGNLGLSPGGNGAAGGGGPPASEGAGPAAGPELSRPQQYTIPGILH
YIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTE
LNQGDLKMPTFESEETKDTEAPTAPQNSQLTWKQGRQLLRQYLQEVGYTDTILDVRSQRVRSLLGLSNSE
PNGSVETKNLEQILNGGESPKQKGQEIKRSSGDVLETFNFLENADDSDEDEENDMIEGIPEGKDKHRMNK
HKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSSGDGTEWDKDDLSPTAEVWDVDQGLISK
LKEQYKKERKGKKGVKRANRTKLYDMIADLGDDELPHIPSGIINQSRSASTRMTDHEGARAEEAEPITFP
SGGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDAFRKTWNPKYTLRSHFDGVRALAFHP
VEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWW
NMPSPSVDPYDTYEPNVLAGTLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWNPQEKLPCICTYNGDKK
HGIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLVILSSQVDSGLQSNNHINRVVSHPTLPVTITAH
EDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDE
SIYDVAFHSSKAYIASAGADALAKVFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH