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Report for CCDS41970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41970.1 Public Homo sapiens 14 SYNDIG1L 24 110 108 CCDS HistoryNCBI Gene:646658Re-query CCDS DB by CCDS ID:41970.1Re-query CCDS DB by GeneID:646658See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41970.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331628.8 ENSP00000331474.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331628.8Link to Ensembl Protein Viewer:ENSP00000331474.3Re-query CCDS DB by Nucleotide ID:ENST00000331628Re-query CCDS DB by Protein ID:ENSP00000331474
Original member Current member EBI ENST00000554823.1 ENSP00000450439.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000554823.1Link to Ensembl Protein Viewer:ENSP00000450439.1Re-query CCDS DB by Nucleotide ID:ENST00000554823Re-query CCDS DB by Protein ID:ENSP00000450439
Original member Current member NCBI NM_001105579.2 NP_001099049.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105579.2Link to Protein Sequence:NP_001099049.1Re-query CCDS DB by Nucleotide ID:NM_001105579Re-query CCDS DB by Protein ID:NP_001099049Link to BLAST:NP_001099049.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099049.1 238 A6NDD5 238 100% 0 0

Chromosomal Locations for CCDS 41970.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 74407535 74407693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74407849 74407989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 74409328 74409744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGAGAGTCTGAGTGAACTACAGAACCCGCTGCTGCCCAGGAGCCCTGCCCATCTCCATGGCCCCTATC
CCTACCCGGAGACCCCACCCAGCTGGTCCTGCCAGGAAAAGCTCTACTCCTACCTCCTAGGTGGCGCTGG
GCCTGCCGGAGCCCACCAGCTCCTGGACCCAGGGTCCCTGCAGCTGGCCGTGGAGGCCTGGTACCGGCCC
AGCTGCCTCCTGGGGAGAGACAAGGTCAAGGAGCCCAGGGCAGGCAGCTGTGAGACAAGCTTCACAGAGG
ACAGGGAGCCCCAGGAGGGGCCTCCAGAGCAGCCCACAGGACCTGGCCAAGCTGCAGAGAATGTCACCAT
CCAGACTGTGTCCTATGGGGTACAAGAGGAGCTGCGGGACCAGGAGGATGACCAGGAGGAAGAGGAGAGC
GATGCCACTTCAACGGAGAGTGAAAGTGAAGACAACTTCCTCACGCTGCCTCCCAGGGACCACCTGGGAC
TTACTCTCTTCTCCATGCTCTGCTGCTTCTGGCCACTGGGCATTGCTGCCTTCTACTTCTCCCAGGGGAC
CAGCAAGGCCATCTCCAAAGGGGACTTCCGCCTGGCCAGCACCACCTCCCGCCGGGCCCTCTTCCTAGCC
ACACTCGCCATCGCCGTGGGGGCCGGTCTCTACGTGGCTGTGGTGGTGGCTCTGGCAGCTTACATGTCCC
AGAACGGTCATGGCTAG

Translation (238 aa):
MESLSELQNPLLPRSPAHLHGPYPYPETPPSWSCQEKLYSYLLGGAGPAGAHQLLDPGSLQLAVEAWYRP
SCLLGRDKVKEPRAGSCETSFTEDREPQEGPPEQPTGPGQAAENVTIQTVSYGVQEELRDQEDDQEEEES
DATSTESESEDNFLTLPPRDHLGLTLFSMLCCFWPLGIAAFYFSQGTSKAISKGDFRLASTTSRRALFLA
TLAIAVGAGLYVAVVVALAAYMSQNGHG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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