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Report for CCDS42291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42291.1 Public Homo sapiens 17 TEFM 24 110 108 CCDS HistoryNCBI Gene:79736Re-query CCDS DB by CCDS ID:42291.1Re-query CCDS DB by GeneID:79736See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000581216.6 ENSP00000462963.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000581216.6Link to Ensembl Protein Viewer:ENSP00000462963.1Re-query CCDS DB by Nucleotide ID:ENST00000581216Re-query CCDS DB by Protein ID:ENSP00000462963
Original member Current member NCBI NM_024683.4 NP_078959.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024683.4Link to Protein Sequence:NP_078959.3Re-query CCDS DB by Nucleotide ID:NM_024683Re-query CCDS DB by Protein ID:NP_078959Link to BLAST:NP_078959.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078959.3 360 Q96QE5-1 360 100% 0 0

Chromosomal Locations for CCDS 42291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 30899169 30899606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30900413 30900562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30904066 30904529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 30906168 30906198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1083 nt):
ATGAGCGGGTCTGTCCTCTTCACGGCGGGAGAGAGGTGGAGATGCTTTCTGACCCCGTCGAGGTCATCCC
TGTACTGGGCCTTACATAATTTCTGCTGTCGGAAAAAATCCACTACACCTAAGAAAATTACTCCCAATGT
TACTTTTTGTGATGAAAATGCAAAGGAGCCCGAAAATGCACTTGACAAGCTCTTCTCTTCAGAACAGCAG
GCTTCCATCTTGCATGTGTTGAATACAGCATCTACTAAAGAACTTGAAGCTTTCCGATTGCTTCGTGGAA
GAAGGTCCATCAATATCGTAGAGCACAGAGAAAACTTTGGGCCATTTCAGAATTTAGAGAGTTTAATGAA
TGTGCCCTTGTTTAAGTATAAAAGTACAGTTCAAGTTTGTAACTCCATACTTTGTCCAAAGACTGGACGG
GAAAAAAGAAAGTCACCGGAAAACCGGTTCCTGAGAAAGCTCCTCAAACCAGACATAGAAAGAGAAAGAC
TTAAGGCAGTTAATAGTATCATATCTATCGTTTTTGGTACTCGAAGAATTGCCTGGGCTCACCTTGATCG
TAAGTTGACAGTGCTGGACTGGCAGCAAAGTGACCGTTGGAGTTTAATGAGAGGAATATACTCATCATCA
GTCTATTTAGAAGAGATTTCCTCGATCATTTCAAAGATGCCTAAAGCAGATTTCTATGTTCTGGAAAAAA
CAGGACTTTCCATTCAGAACTCATCTCTGTTTCCAATACTGTTACATTTTCATATCATGGAAGCCATGCT
GTATGCCTTATTAAATAAAACTTTTGCCCAGGATGGGCAGCATCAGGTGCTGAGCATGAATCGAAATGCA
GTGGGGAAGCATTTTGAACTGATGATTGGTGACTCCCGGACTAGTGGAAAAGAGCTAGTGAAGCAGTTTC
TCTTCGATTCTATACTGAAGGCGGATCCTCGGGTGTTCTTCCCATCAGATAAAATAGTTCACTACAGACA
GATGTTTTTATCTACTGAACTACAAAGAGTAGAAGAGCTTTATGATTCATTATTACAAGCTATTGCCTTC
TATGAATTAGCAGTGTTTGACTCTCAGCCTTAG

Translation (360 aa):
MSGSVLFTAGERWRCFLTPSRSSLYWALHNFCCRKKSTTPKKITPNVTFCDENAKEPENALDKLFSSEQQ
ASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNVPLFKYKSTVQVCNSILCPKTGR
EKRKSPENRFLRKLLKPDIERERLKAVNSIISIVFGTRRIAWAHLDRKLTVLDWQQSDRWSLMRGIYSSS
VYLEEISSIISKMPKADFYVLEKTGLSIQNSSLFPILLHFHIMEAMLYALLNKTFAQDGQHQVLSMNRNA
VGKHFELMIGDSRTSGKELVKQFLFDSILKADPRVFFPSDKIVHYRQMFLSTELQRVEELYDSLLQAIAF
YELAVFDSQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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