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Report for CCDS42370.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42370.1 Public Homo sapiens 17 CSHL1 24 110 108 CCDS HistoryNCBI Gene:1444Re-query CCDS DB by CCDS ID:42370.1Re-query CCDS DB by GeneID:1444See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42370.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346606.10 ENSP00000316360.10 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346606.10Link to Ensembl Protein Viewer:ENSP00000316360.10Re-query CCDS DB by Nucleotide ID:ENST00000346606Re-query CCDS DB by Protein ID:ENSP00000316360
Original member Current member NCBI NM_001318.4 NP_001309.3 Accepted alive Link to Nucleotide Sequence:NM_001318.4Link to Protein Sequence:NP_001309.3Re-query CCDS DB by Nucleotide ID:NM_001318Re-query CCDS DB by Protein ID:NP_001309Link to BLAST:NP_001309.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309.3 128 Q14406-4 128 100% 0 0

Chromosomal Locations for CCDS 42370.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 63909711 63909908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910162 63910326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 63910420 63910443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGAGGAAACGCAGCAGAAATCCAACTTAGAGCTGCTCCACATCTCCCTGCTGCTCATCGAGTCGCGGC
TGGAGCCCGTGCGGTTCCTCAGGAGTACCTTCACCAACAACCTGGTGTATGACACCTCGGACAGCGATGA
CTATCACCTCCTAAAGGACCTAGAGGAAGGCATCCAAATGCTGATGGGGAGGCTGGAAGACGGCAGCCAC
CTGACTGGGCAGACCCTCAAGCAGACCTACAGCAAGTTTGACACAAACTCGCACAACCATGACGCACTGC
TCAAGAACTACGGGCTGCTCCACTGCTTCAGGAAGGACATGGACAAGGTCGAGACATTCCTGCGCATGGT
GCAGTGCCGCTCTGTGGAGGGCAGCTGTGGCTTCTAG

Translation (128 aa):
MEETQQKSNLELLHISLLLIESRLEPVRFLRSTFTNNLVYDTSDSDDYHLLKDLEEGIQMLMGRLEDGSH
LTGQTLKQTYSKFDTNSHNHDALLKNYGLLHCFRKDMDKVETFLRMVQCRSVEGSCGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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