NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42404.1 Public Homo sapiens 17 NARF 24 110 108 CCDS HistoryNCBI Gene:26502Re-query CCDS DB by CCDS ID:42404.1Re-query CCDS DB by GeneID:26502See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000390006.8 ENSP00000374656.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000390006.8Link to Ensembl Protein Viewer:ENSP00000374656.4Re-query CCDS DB by Nucleotide ID:ENST00000390006Re-query CCDS DB by Protein ID:ENSP00000374656
Original member Current member NCBI NM_001038618.3 NP_001033707.1 Accepted alive Link to Nucleotide Sequence:NM_001038618.3Link to Protein Sequence:NP_001033707.1Re-query CCDS DB by Nucleotide ID:NM_001038618Re-query CCDS DB by Protein ID:NP_001033707Link to BLAST:NP_001033707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033707.1 397 Q9UHQ1-4 397 100% 0 0

Chromosomal Locations for CCDS 42404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82464356 82464430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82468764 82468896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82472564 82472698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82478800 82478918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82481082 82481211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82483716 82483779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82484813 82484950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82485497 82485654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82487916 82488157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGACTGCAGAGGAAGGAGTCCAACTTTCCCAGCAAAATGCCAAGGACTTCTTCCGCGTTCTGAACCTTA
ACAAGAAATGTGATACCTCAAAGCACAAAGTGCTGGTAGTGTCTGTGTGTCCTCAATCTTTGCCTTATTT
TGCTGCTAAATTCAACCTCAGTGTAACTGATGCATCCAGAAGACTCTGTGGTTTCCTCAAAAGTCTTGGG
GTGCACTATGTATTTGATACGACGATAGCTGCGGATTTTAGTATCCTGGAGAGTCAAAAAGAATTCGTGC
GTCGCTATCGCCAGCACAGTGAGGAGGAACGCACCCTGCCCATGCTGACCTCTGCCTGTCCTGGCTGGGT
CCGATACGCCGAGCGGGTGCTGGGTCGCCCCATCACTGCCCACCTCTGCACCGCCAAGTCCCCCCAGCAG
GTCATGGGCTCTTTGGTGAAGGATTATTTCGCCAGACAGCAGAACCTGTCTCCAGAGAAGATTTTCCACG
TCATTGTGGCCCCTTGTTATGACAAGAAGCTGGAGGCTCTTCAGGAAAGCCTTCCCCCTGCTTTGCATGG
CTCCCGGGGCGCTGACTGCGTGTTAACATCAGGTGAAATTGCTCAAATAATGGAGCAAGGTGACCTCTCA
GTGAGAGATGCTGCCGTCGACACTCTGTTTGGAGACTTGAAGGAGGACAAAGTGACGCGTCATGATGGAG
CCAGCTCAGACGGGCACCTGGCACACATCTTCAGACATGCGGCCAAGGAGCTGTTCAACGAGGATGTGGA
GGAGGTCACTTACCGAGCCCTGAGAAACAAAGACTTCCAAGAGGTCACCCTTGAGAAGAACGGAGAGGTG
GTGTTACGCTTTGCTGCAGCCTATGGCTTTCGAAACATCCAGAACATGATCCTGAAGCTTAAGAAGGGCA
AGTTCCCATTCCACTTTGTGGAGGTCCTCGCCTGTGCTGGAGGATGCTTAAATGGCAGAGGCCAAGCCCA
GACTCCAGACGGACATGCGGATAAGGCCCTGCTGCGGCAGATGGAAGGCATTTACGCTGACATCCCTGTG
CGGCGTCCGGAGTCCAGTGCACACGTGCAGGAGCTGTACCAGGAGTGGCTGGAGGGGATCAACTCCCCCA
AGGCCCGAGAGGTGCTGCATACCACGTACCAGAGCCAGGAGCGTGGCACACACAGCCTGGACATCAAGTG
GTGA

Translation (397 aa):
MTAEEGVQLSQQNAKDFFRVLNLNKKCDTSKHKVLVVSVCPQSLPYFAAKFNLSVTDASRRLCGFLKSLG
VHYVFDTTIAADFSILESQKEFVRRYRQHSEEERTLPMLTSACPGWVRYAERVLGRPITAHLCTAKSPQQ
VMGSLVKDYFARQQNLSPEKIFHVIVAPCYDKKLEALQESLPPALHGSRGADCVLTSGEIAQIMEQGDLS
VRDAAVDTLFGDLKEDKVTRHDGASSDGHLAHIFRHAAKELFNEDVEEVTYRALRNKDFQEVTLEKNGEV
VLRFAAAYGFRNIQNMILKLKKGKFPFHFVEVLACAGGCLNGRGQAQTPDGHADKALLRQMEGIYADIPV
RRPESSAHVQELYQEWLEGINSPKAREVLHTTYQSQERGTHSLDIKW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH